DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VAATPPPS
Uniprot ID:
P98164
Source protein:
Low-density lipoprotein receptor-related protein 2
Source gene:
LRP2
Class:
DEG_SCF_FBW7_1
Location:
4609:4616
E3 ligase:
FBXW7
DEGRON score:
0.9659
ASA_SCORE:
91.425
COIL:
0.8991
CONS_SCORE:
0.445
DSS_SCORE:
0.7632
HELIX:
0.0879
FCONS_SCORE:
1.1533
RIG_SCORE:
0.5456
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P4614S
TCGA-38-4632
LUAD
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.5641
p.P4614S
DO23858
LUAD
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.5641
p.A4611V
TCGA-AP-A056
UCEC
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.5825
p.A4611V
TCGA-B5-A3FA
UCEC
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.5825
p.A4611V
TCGA-BS-A0UF
UCEC
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.5825
p.A4611V
DO52402
UCEC
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.5825
p.A4611V
DO41488
UCEC
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.5825
p.A4611V
DO43971
UCEC
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.5825
p.E4604G
TCGA-B8-A54D
KIRC
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.1944
p.E4604G
DO49730
KIRC
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.1944
p.S4618L
TCGA-EB-A41A
SKCM
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.2778
p.S4618L
DO221128
MALY
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.2778
p.S4618L
DO222527
MELA
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.2778
p.S4618L
DO37429
SKCM
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.2778
p.S4618L
ACH-001656
Leukemia
CCLE
VAATPPPS
DEG_SCF_FBW7_1
0.2778
p.P4620S
TCGA-FW-A3R5
SKCM
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.2222
p.P4620S
DO37406
SKCM
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.2222
p.E4604K
TCGA-WS-AB45
COAD
TCGA
VAATPPPS
DEG_SCF_FBW7_1
0.1944
p.E4604K
DO51734
COAD
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.1944
p.E4602V
DO230311
COCA
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.1389
p.P4625L
DO220886
MELA
ICGC
VAATPPPS
DEG_SCF_FBW7_1
0.0833
p.A4599V
SIDM00193
Colorectal Carcinoma
GDSC
VAATPPPS
DEG_SCF_FBW7_1
0.0556
p.A4599V
ACH-000991
Colon/Colorectal Cancer
CCLE
VAATPPPS
DEG_SCF_FBW7_1
0.0556
p.A4599V
SNU-81
large_intestine
COSMIC
VAATPPPS
DEG_SCF_FBW7_1
0.0556
p.P4620L
SIDM00511
Small Cell Lung Carcinoma
GDSC
VAATPPPS
DEG_SCF_FBW7_1
0.2222
p.P4620L
ACH-000257
Lung Cancer
CCLE
VAATPPPS
DEG_SCF_FBW7_1
0.2222
p.P4620L
COR-L279
lung
COSMIC
VAATPPPS
DEG_SCF_FBW7_1
0.2222
Drug responses associated with LRP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VAATPPPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P09874
Poly [ADP-ribose] polymerase 1
DEG_SCF_FBW7_1
365:372
VAATPPPS
FBXW7
0.8146
More...
P98164
Low-density lipoprotein receptor-related protein 2
DEG_SCF_FBW7_1
4609:4616
VAATPPPS
FBXW7
0.9659
More...