DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VAPFMD
Uniprot ID:
O76083
Source protein:
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
Source gene:
PDE9A
Class:
LIG_APCC_ABBA_1
Location:
498:503
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6808
ASA_SCORE:
42.5833
COIL:
0.8502
CONS_SCORE:
0.7643
DSS_SCORE:
0.3549
HELIX:
0.0987
FCONS_SCORE:
1.1015
RIG_SCORE:
0.8013
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.K506N
TCGA-AA-3864
COAD
TCGA
VAPFMD
LIG_APCC_ABBA_1
0.3611
p.A510V
TCGA-XK-AAIW
PRAD
TCGA
VAPFMD
LIG_APCC_ABBA_1
0.1389
p.D489N
TCGA-ZH-A8Y5
CHOL
TCGA
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.D489G
DO14343
HNSC
ICGC
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.A512S
SIDM00491
Thyroid Gland Carcinoma
GDSC
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.A512S
ASH-3
thyroid
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.R495Q
BHY
upper_aerodigestive_tract
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.25
p.R495Q
TC-YIK
cervix
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.25
p.S492F
SK-MEL-31
skin
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.2778
p.S511F
SK-MEL-31
skin
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.5556
p.R502Q
BHY
upper_aerodigestive_tract
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.7329
p.R502Q
TC-YIK
cervix
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.7329
p.R488Q
BHY
upper_aerodigestive_tract
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.0556
p.R488Q
TC-YIK
cervix
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.0556
p.L499R
JVM-2
haematopoietic_and_lymphoid_tissue
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.8428
Drug responses associated with PDE9A mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VAPFMD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O76083
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
LIG_APCC_ABBA_1
498:503
VAPFMD
APC,CDC20,FZR1
0.6808
More...