DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VAPFMD
Uniprot ID:
O76083
Source protein:
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
Source gene:
PDE9A
Class:
LIG_APCC_ABBA_1
Location:
498:503
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6808
ASA_SCORE:
42.5833
COIL:
0.8502
CONS_SCORE:
0.7643
DSS_SCORE:
0.3549
HELIX:
0.0987
FCONS_SCORE:
1.1015
RIG_SCORE:
0.8013
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L499R
JVM-2
haematopoietic_and_lymphoid_tissue
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.8428
p.R502Q
BHY
upper_aerodigestive_tract
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.7329
p.R502Q
TC-YIK
cervix
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.7329
p.S511F
SK-MEL-31
skin
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.5556
p.K506N
TCGA-AA-3864
COAD
TCGA
VAPFMD
LIG_APCC_ABBA_1
0.3611
p.S492F
SK-MEL-31
skin
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.2778
p.R495Q
BHY
upper_aerodigestive_tract
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.25
p.R495Q
TC-YIK
cervix
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.25
p.A510V
TCGA-XK-AAIW
PRAD
TCGA
VAPFMD
LIG_APCC_ABBA_1
0.1389
p.D489N
TCGA-ZH-A8Y5
CHOL
TCGA
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.D489G
DO14343
HNSC
ICGC
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.A512S
SIDM00491
Thyroid Gland Carcinoma
GDSC
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.A512S
ASH-3
thyroid
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.0833
p.R488Q
BHY
upper_aerodigestive_tract
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.0556
p.R488Q
TC-YIK
cervix
COSMIC
VAPFMD
LIG_APCC_ABBA_1
0.0556
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Drug responses associated with PDE9A mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VAPFMD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O76083
High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
LIG_APCC_ABBA_1
498:503
VAPFMD
APC,CDC20,FZR1
0.6808
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