DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VARTPSVT
Uniprot ID:
Q8IWN7
Source protein:
Retinitis pigmentosa 1-like 1 protein
Source gene:
RP1L1
Class:
DEG_SCF_FBW7_1
Location:
21:28
E3 ligase:
FBXW7
DEGRON score:
0.9971
ASA_SCORE:
79.2875
COIL:
0.8023
CONS_SCORE:
0.2354
DSS_SCORE:
0.4255
HELIX:
0.0165
FCONS_SCORE:
1.004
RIG_SCORE:
0.7161
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T24N
TCGA-13-0885
OV
TCGA
VARTPSVT
DEG_SCF_FBW7_1
0.8166
p.T24N
DO30490
OV
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.8166
p.A33D
TCGA-17-Z042
LUAD
TCGA
VARTPSVT
DEG_SCF_FBW7_1
0.1944
p.A33D
TCGA-AA-3977
COAD
TCGA
VARTPSVT
DEG_SCF_FBW7_1
0.1944
p.A33D
DO8730
COAD
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.1944
p.E15D
TCGA-78-7542
LUAD
TCGA
VARTPSVT
DEG_SCF_FBW7_1
0.1667
p.E15D
DO24760
LUAD
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.1667
p.T31M
TCGA-AJ-A3OK
UCEC
TCGA
VARTPSVT
DEG_SCF_FBW7_1
0.25
p.T31M
DO43602
UCEC
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.25
p.P11L
TCGA-EE-A29D
SKCM
TCGA
VARTPSVT
DEG_SCF_FBW7_1
0.0556
p.P11L
DO38123
SKCM
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.0556
p.P11L
SIDM00600
Thyroid Gland Carcinoma
GDSC
VARTPSVT
DEG_SCF_FBW7_1
0.0556
p.P11L
SIDM00368
Small Cell Lung Carcinoma
GDSC
VARTPSVT
DEG_SCF_FBW7_1
0.0556
p.P11L
SIDM00720
Mesothelioma
GDSC
VARTPSVT
DEG_SCF_FBW7_1
0.0556
p.P11L
SIDM01460
Glioma
GDSC
VARTPSVT
DEG_SCF_FBW7_1
0.0556
p.S26L
TCGA-JW-A5VJ
CESC
TCGA
VARTPSVT
DEG_SCF_FBW7_1
0.6556
p.S26L
DO49974
CESC
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.6556
p.T37A
DO222755
COCA
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.0833
p.T28N
DO222778
COCA
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.7055
p.R14C
DO233869
GACA
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.1389
p.K35M
DO229459
SKCA
ICGC
VARTPSVT
DEG_SCF_FBW7_1
0.25
p.P19H
SIDM02021
Esophageal Carcinoma
GDSC
VARTPSVT
DEG_SCF_FBW7_1
0.2778
p.T24S
ACH-001270
Sarcoma
CCLE
VARTPSVT
DEG_SCF_FBW7_1
0.8227
Drug responses associated with RP1L1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VARTPSVT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IWN7
Retinitis pigmentosa 1-like 1 protein
DEG_SCF_FBW7_1
21:28
VARTPSVT
FBXW7
0.9971
More...