DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VDLYTD
Uniprot ID:
Q9UM82
Source protein:
Spermatogenesis-associated protein 2
Source gene:
SPATA2
Class:
LIG_APCC_ABBA_1
Location:
335:340
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8912
ASA_SCORE:
67.2
COIL:
0.6218
CONS_SCORE:
0.5429
DSS_SCORE:
0.4952
HELIX:
0.2517
FCONS_SCORE:
1.216
RIG_SCORE:
0.798
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R344W
TCGA-78-7145
LUAD
TCGA
VDLYTD
LIG_APCC_ABBA_1
0.2222
p.R325C
TCGA-AA-A01R
COAD
TCGA
VDLYTD
LIG_APCC_ABBA_1
0.0556
p.R325C
TCGA-MX-A5UJ
STAD
TCGA
VDLYTD
LIG_APCC_ABBA_1
0.0556
p.V335M
TCGA-EE-A29T
SKCM
TCGA
VDLYTD
LIG_APCC_ABBA_1
0.6097
p.V335M
DO37742
SKCM
ICGC
VDLYTD
LIG_APCC_ABBA_1
0.6097
p.V335M
SIDM00145
T-Lymphoblastic Leukemia
GDSC
VDLYTD
LIG_APCC_ABBA_1
0.6097
p.V335M
ACH-001127
Leukemia
CCLE
VDLYTD
LIG_APCC_ABBA_1
0.6097
p.V335M
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
VDLYTD
LIG_APCC_ABBA_1
0.6097
p.T331A
TCGA-F5-6810
READ
TCGA
VDLYTD
LIG_APCC_ABBA_1
0.2222
p.T331A
DO37291
READ
ICGC
VDLYTD
LIG_APCC_ABBA_1
0.2222
p.R349W
TCGA-QB-A6FS
SKCM
TCGA
VDLYTD
LIG_APCC_ABBA_1
0.0833
p.R349W
DO48654
SKCM
ICGC
VDLYTD
LIG_APCC_ABBA_1
0.0833
p.C335R
DO5326
BRCA
ICGC
VDLYTD
LIG_APCC_ABBA_1
0.8301
p.A331T
DO13522
GBM
ICGC
VDLYTD
LIG_APCC_ABBA_1
0.2222
p.R348H
DO51112
PRAD
ICGC
VDLYTD
LIG_APCC_ABBA_1
0.1111
p.R348H
SIDM00146
Breast Carcinoma
GDSC
VDLYTD
LIG_APCC_ABBA_1
0.1111
p.R348H
ACH-000768
Breast Cancer
CCLE
VDLYTD
LIG_APCC_ABBA_1
0.1111
p.R348H
MDA-MB-231
breast
COSMIC
VDLYTD
LIG_APCC_ABBA_1
0.1111
Drug responses associated with SPATA2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDLYTD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UM82
Spermatogenesis-associated protein 2
LIG_APCC_ABBA_1
335:340
VDLYTD
APC,CDC20,FZR1
0.8912
More...