DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VDTPPPS
Uniprot ID:
P12111
Source protein:
Collagen alpha-3
Source gene:
COL6A3
Class:
DEG_SCF_FBW7_1
Location:
1625:1631
E3 ligase:
FBXW7
DEGRON score:
0.7554
ASA_SCORE:
79.5571
COIL:
0.9494
CONS_SCORE:
0.4221
DSS_SCORE:
0.7737
HELIX:
0.011
FCONS_SCORE:
0.9343
RIG_SCORE:
0.5768
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.I1640T
TCGA-29-1688
OV
TCGA
VDTPPPS
DEG_SCF_FBW7_1
0.0833
p.A1618T
TCGA-61-2096
OV
TCGA
VDTPPPS
DEG_SCF_FBW7_1
0.1389
p.T1627A
TCGA-86-8669
LUAD
TCGA
VDTPPPS
DEG_SCF_FBW7_1
0.7139
p.K1636N
TCGA-AA-3984
COAD
TCGA
VDTPPPS
DEG_SCF_FBW7_1
0.3056
p.K1636N
TCGA-EO-A22X
UCEC
TCGA
VDTPPPS
DEG_SCF_FBW7_1
0.3056
p.E1634K
TCGA-B5-A3FA
UCEC
TCGA
VDTPPPS
DEG_SCF_FBW7_1
0.25
p.K1635R
TCGA-DD-A11C
LIHC
TCGA
VDTPPPS
DEG_SCF_FBW7_1
0.3333
p.L1641P
DO1608
BRCA
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.0556
p.D1638H
DO7418
CLLE
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.1389
p.A1619V
DO9226
COAD
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.1667
p.A1619V
DO49824
PRAD
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.1667
p.A1619V
DO41871
UCEC
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.1667
p.A1619T
DO234213
ESAD
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.1667
p.L1624I
DO233679
GACA
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.3056
p.T1629N
DO228976
LICA
ICGC
VDTPPPS
DEG_SCF_FBW7_1
0.7055
p.A1638T
SIDM00993
Plasma Cell Myeloma
GDSC
VDTPPPS
DEG_SCF_FBW7_1
0.1389
p.A1638T
SIDM01439
Hepatocellular Carcinoma
GDSC
VDTPPPS
DEG_SCF_FBW7_1
0.1389
p.P1630S
SIDM00967
Ovarian Carcinoma
GDSC
VDTPPPS
DEG_SCF_FBW7_1
0.5641
p.R1632L
SIDM00092
Ovarian Carcinoma
GDSC
VDTPPPS
DEG_SCF_FBW7_1
0.3056
p.R1632L
OVCAR-4
ovary
COSMIC
VDTPPPS
DEG_SCF_FBW7_1
0.3056
p.P1630H
SIDM00487
Colorectal Carcinoma
GDSC
VDTPPPS
DEG_SCF_FBW7_1
0.6583
p.P1630H
ACH-000963
Colon/Colorectal Cancer
CCLE
VDTPPPS
DEG_SCF_FBW7_1
0.6583
p.P1630H
CCK-81
large_intestine
COSMIC
VDTPPPS
DEG_SCF_FBW7_1
0.6583
p.D1624N
TGBC24TKB
biliary_tract
COSMIC
VDTPPPS
DEG_SCF_FBW7_1
0.3056
p.G1621D
NCI-H1155
lung
COSMIC
VDTPPPS
DEG_SCF_FBW7_1
0.2222
Drug responses associated with COL6A3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VDTPPPS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P12111
Collagen alpha-3
DEG_SCF_FBW7_1
1625:1631
VDTPPPS
FBXW7
0.7554
More...