DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VFLHCE
Uniprot ID:
P55259
Source protein:
Pancreatic secretory granule membrane major glycoprotein GP2
Source gene:
GP2
Class:
LIG_APCC_ABBA_1
Location:
457:462
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5724
ASA_SCORE:
24.9167
COIL:
0.022
CONS_SCORE:
0.7716
DSS_SCORE:
0.0122
HELIX:
0.0017
FCONS_SCORE:
1.3753
RIG_SCORE:
0.931
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.L459R
TCGA-YG-AA3O
SKCM
TCGA
VFLHCE
LIG_APCC_ABBA_1
0.8428
p.E462K
TCGA-IN-A6RP
STAD
TCGA
VFLHCE
LIG_APCC_ABBA_1
0.7022
p.F458L
SIDM01206
Neuroblastoma
GDSC
VFLHCE
LIG_APCC_ABBA_1
0.587
p.F458L
ACH-000310
Neuroblastoma
CCLE
VFLHCE
LIG_APCC_ABBA_1
0.587
p.F458L
ACH-002248
Neuroblastoma
CCLE
VFLHCE
LIG_APCC_ABBA_1
0.587
p.F458L
IMR-5
autonomic_ganglia
COSMIC
VFLHCE
LIG_APCC_ABBA_1
0.587
p.F455L
IMR-5
autonomic_ganglia
COSMIC
VFLHCE
LIG_APCC_ABBA_1
0.2778
p.H453Q
TCGA-A5-A2K5
UCEC
TCGA
VFLHCE
LIG_APCC_ABBA_1
0.2222
p.L466I
DO23838
LUAD
ICGC
VFLHCE
LIG_APCC_ABBA_1
0.2222
p.S468Y
TCGA-BS-A0UF
UCEC
TCGA
VFLHCE
LIG_APCC_ABBA_1
0.1667
p.L469I
TCGA-05-4396
LUAD
TCGA
VFLHCE
LIG_APCC_ABBA_1
0.1389
p.M447V
TCGA-43-6143
LUSC
TCGA
VFLHCE
LIG_APCC_ABBA_1
0.0556
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Drug responses associated with GP2 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VFLHCE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P55259
Pancreatic secretory granule membrane major glycoprotein GP2
LIG_APCC_ABBA_1
457:462
VFLHCE
APC,CDC20,FZR1
0.5724
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