DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VGKTPTLE
Uniprot ID:
Q9H175
Source protein:
Cysteine/serine-rich nuclear protein 2
Source gene:
CSRNP2
Class:
DEG_SCF_FBW7_2
Location:
475:482
E3 ligase:
FBXW7
DEGRON score:
0.8308
ASA_SCORE:
73.175
COIL:
0.7103
CONS_SCORE:
0.3617
DSS_SCORE:
0.4151
HELIX:
0.2335
FCONS_SCORE:
1.0282
RIG_SCORE:
0.7288
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P486A
TCGA-33-6738
LUSC
TCGA
VGKTPTLE
DEG_SCF_FBW7_2
0.2222
p.P486A
DO26516
LUSC
ICGC
VGKTPTLE
DEG_SCF_FBW7_2
0.2222
p.S473A
TCGA-69-7763
LUAD
TCGA
VGKTPTLE
DEG_SCF_FBW7_2
0.2778
p.S473A
DO24616
LUAD
ICGC
VGKTPTLE
DEG_SCF_FBW7_2
0.2778
p.E487K
TCGA-AA-3984
COAD
TCGA
VGKTPTLE
DEG_SCF_FBW7_2
0.1944
p.E487K
DO9002
COAD
ICGC
VGKTPTLE
DEG_SCF_FBW7_2
0.1944
p.E487K
SIDM01016
T-Lymphoblastic Leukemia
GDSC
VGKTPTLE
DEG_SCF_FBW7_2
0.1944
p.D488Y
TCGA-B5-A0JY
UCEC
TCGA
VGKTPTLE
DEG_SCF_FBW7_2
0.1667
p.D488Y
DO43041
UCEC
ICGC
VGKTPTLE
DEG_SCF_FBW7_2
0.1667
p.P491S
TCGA-EE-A29E
SKCM
TCGA
VGKTPTLE
DEG_SCF_FBW7_2
0.0833
p.P491S
DO37831
SKCM
ICGC
VGKTPTLE
DEG_SCF_FBW7_2
0.0833
p.L485S
TCGA-OR-A5LJ
ACC
TCGA
VGKTPTLE
DEG_SCF_FBW7_2
0.25
p.K472T
DO228350
BRCA
ICGC
VGKTPTLE
DEG_SCF_FBW7_2
0.3611
p.L481V
SIDM00672
Hepatocellular Carcinoma
GDSC
VGKTPTLE
DEG_SCF_FBW7_2
0.5654
p.L481V
SIDM00454
Rhabdomyosarcoma
GDSC
VGKTPTLE
DEG_SCF_FBW7_2
0.5654
p.L481V
SIDM00426
Rhabdomyosarcoma
GDSC
VGKTPTLE
DEG_SCF_FBW7_2
0.5654
p.L481V
SIDM00954
Breast Carcinoma
GDSC
VGKTPTLE
DEG_SCF_FBW7_2
0.5654
p.S473L
SIDM00683
Prostate Carcinoma
GDSC
VGKTPTLE
DEG_SCF_FBW7_2
0.2778
p.S473L
ACH-000977
lymph_node
CCLE
VGKTPTLE
DEG_SCF_FBW7_2
0.2778
p.S473L
LNCaP-Clone-FGC
prostate
COSMIC
VGKTPTLE
DEG_SCF_FBW7_2
0.2778
p.A483T
SIDM01638
Non-Cancerous
GDSC
VGKTPTLE
DEG_SCF_FBW7_2
0.3056
p.A483T
ACH-002342
Non-Cancerous
CCLE
VGKTPTLE
DEG_SCF_FBW7_2
0.3056
p.T478K
ACH-001513
Cervical Cancer
CCLE
VGKTPTLE
DEG_SCF_FBW7_2
0.7306
Drug responses associated with CSRNP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGKTPTLE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9H175
Cysteine/serine-rich nuclear protein 2
DEG_SCF_FBW7_2
475:482
VGKTPTLE
FBXW7
0.8308
More...