DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VGTPTYS
Uniprot ID:
Q9UPQ7
Source protein:
E3 ubiquitin-protein ligase PDZRN3
Source gene:
PDZRN3
Class:
DEG_SCF_FBW7_1
Location:
817:823
E3 ligase:
FBXW7
DEGRON score:
0.9828
ASA_SCORE:
86.4714
COIL:
0.9426
CONS_SCORE:
0.3439
DSS_SCORE:
0.6684
HELIX:
0.0163
FCONS_SCORE:
0.8706
RIG_SCORE:
0.6594
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T812A
TCGA-06-5416
GBM
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.1944
p.T812A
DO10880
GBM
ICGC
VGTPTYS
DEG_SCF_FBW7_1
0.1944
p.D830G
TCGA-17-Z047
LUAD
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.1389
p.T821N
TCGA-18-4721
LUSC
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.5944
p.K827N
TCGA-21-1079
LUSC
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.3333
p.T819S
TCGA-24-0982
OV
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.8227
p.L829M
TCGA-44-7661
LUAD
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.1667
p.L829M
DO23602
LUAD
ICGC
VGTPTYS
DEG_SCF_FBW7_1
0.1667
p.P820R
TCGA-90-7769
LUSC
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.7512
p.E813A
TCGA-CV-5432
HNSC
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.2222
p.E813K
TCGA-CV-7568
HNSC
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.2222
p.E813K
DO14160
HNSC
ICGC
VGTPTYS
DEG_SCF_FBW7_1
0.2222
p.P815S
TCGA-D3-A8GI
SKCM
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.2778
p.T812M
TCGA-DU-6392
LGG
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.1944
p.T812M
DO233797
GACA
ICGC
VGTPTYS
DEG_SCF_FBW7_1
0.1944
p.T812M
DO22237
LGG
ICGC
VGTPTYS
DEG_SCF_FBW7_1
0.1944
p.T821I
TCGA-ER-A194
SKCM
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.5966
p.T812K
TCGA-NJ-A4YQ
LUAD
TCGA
VGTPTYS
DEG_SCF_FBW7_1
0.1944
p.T812K
DO218944
LUAD
ICGC
VGTPTYS
DEG_SCF_FBW7_1
0.1944
p.D814Y
DO23164
LINC
ICGC
VGTPTYS
DEG_SCF_FBW7_1
0.25
p.L809H
SIDM00447
B-Lymphoblastic Leukemia
GDSC
VGTPTYS
DEG_SCF_FBW7_1
0.1111
p.L809H
REH
haematopoietic_and_lymphoid_tissue
COSMIC
VGTPTYS
DEG_SCF_FBW7_1
0.1111
p.L808M
SIDM00660
Colorectal Carcinoma
GDSC
VGTPTYS
DEG_SCF_FBW7_1
0.0833
p.L808M
LS-411N
large_intestine
COSMIC
VGTPTYS
DEG_SCF_FBW7_1
0.0833
p.G818R
SIDM01695
Acute Myeloid Leukemia
GDSC
VGTPTYS
DEG_SCF_FBW7_1
0.6457
p.D814G
ACH-000229
Non-Cancerous
CCLE
VGTPTYS
DEG_SCF_FBW7_1
0.25
Drug responses associated with PDZRN3 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VGTPTYS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UPQ7
E3 ubiquitin-protein ligase PDZRN3
DEG_SCF_FBW7_1
817:823
VGTPTYS
FBXW7
0.9828
More...