DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VIPHVD
Uniprot ID:
Q8TEB7
Source protein:
E3 ubiquitin-protein ligase RNF128
Source gene:
RNF128
Class:
LIG_APCC_ABBA_1
Location:
402:407
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.52
ASA_SCORE:
93.1167
COIL:
0.793
CONS_SCORE:
0.2933
DSS_SCORE:
0.5834
HELIX:
0.0108
FCONS_SCORE:
1.0043
RIG_SCORE:
0.7463
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D401G
TCGA-06-0213
GBM
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.D401G
DO11836
GBM
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.N408K
TCGA-44-2657
LUAD
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.N408K
ACH-000560
Gastric Cancer
CCLE
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.N408K
ECC10
stomach
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.F411S
TCGA-AJ-A3EK
UCEC
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.2222
p.S397Y
TCGA-AZ-4315
COAD
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.1944
p.S397Y
DO8842
COAD
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.1944
p.E415K
TCGA-EE-A2MJ
SKCM
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.1111
p.E415K
DO38099
SKCM
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.1111
p.N396K
TCGA-ND-A4WC
UCS
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.1667
p.A396V
DO41109
UCEC
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.1667
p.A396V
COLO-668
lung
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.1667
p.H393R
SIDM00630
Breast Carcinoma
GDSC
VIPHVD
LIG_APCC_ABBA_1
0.0833
p.H393R
ACH-000876
Breast Cancer
CCLE
VIPHVD
LIG_APCC_ABBA_1
0.0833
p.H393R
MDA-MB-415
breast
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.0833
p.I403V
SIDM00845
Burkitt's Lymphoma
GDSC
VIPHVD
LIG_APCC_ABBA_1
0.5965
p.D407N
SIDM00489
Oral Cavity Carcinoma
GDSC
VIPHVD
LIG_APCC_ABBA_1
0.6932
p.D407N
ACH-002043
Head and Neck Cancer
CCLE
VIPHVD
LIG_APCC_ABBA_1
0.6932
p.D407N
Ca9-22
upper_aerodigestive_tract
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.6932
Drug responses associated with RNF128 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VIPHVD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8TEB7
E3 ubiquitin-protein ligase RNF128
LIG_APCC_ABBA_1
402:407
VIPHVD
APC,CDC20,FZR1
0.52
More...