DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VIPHVD
Uniprot ID:
Q8TEB7
Source protein:
E3 ubiquitin-protein ligase RNF128
Source gene:
RNF128
Class:
LIG_APCC_ABBA_1
Location:
402:407
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.52
ASA_SCORE:
93.1167
COIL:
0.793
CONS_SCORE:
0.2933
DSS_SCORE:
0.5834
HELIX:
0.0108
FCONS_SCORE:
1.0043
RIG_SCORE:
0.7463
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D407N
SIDM00489
Oral Cavity Carcinoma
GDSC
VIPHVD
LIG_APCC_ABBA_1
0.6932
p.D407N
ACH-002043
Head and Neck Cancer
CCLE
VIPHVD
LIG_APCC_ABBA_1
0.6932
p.D407N
Ca9-22
upper_aerodigestive_tract
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.6932
p.I403V
SIDM00845
Burkitt's Lymphoma
GDSC
VIPHVD
LIG_APCC_ABBA_1
0.5965
p.D401G
TCGA-06-0213
GBM
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.D401G
DO11836
GBM
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.N408K
TCGA-44-2657
LUAD
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.N408K
ACH-000560
Gastric Cancer
CCLE
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.N408K
ECC10
stomach
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.3056
p.F411S
TCGA-AJ-A3EK
UCEC
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.2222
p.S397Y
TCGA-AZ-4315
COAD
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.1944
p.S397Y
DO8842
COAD
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.1944
p.N396K
TCGA-ND-A4WC
UCS
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.1667
p.A396V
DO41109
UCEC
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.1667
p.A396V
COLO-668
lung
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.1667
p.E415K
TCGA-EE-A2MJ
SKCM
TCGA
VIPHVD
LIG_APCC_ABBA_1
0.1111
p.E415K
DO38099
SKCM
ICGC
VIPHVD
LIG_APCC_ABBA_1
0.1111
p.H393R
SIDM00630
Breast Carcinoma
GDSC
VIPHVD
LIG_APCC_ABBA_1
0.0833
p.H393R
ACH-000876
Breast Cancer
CCLE
VIPHVD
LIG_APCC_ABBA_1
0.0833
p.H393R
MDA-MB-415
breast
COSMIC
VIPHVD
LIG_APCC_ABBA_1
0.0833
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Drug responses associated with RNF128 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VIPHVD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8TEB7
E3 ubiquitin-protein ligase RNF128
LIG_APCC_ABBA_1
402:407
VIPHVD
APC,CDC20,FZR1
0.52
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