DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VLPYDD
Uniprot ID:
Q16825
Source protein:
Tyrosine-protein phosphatase non-receptor type 21
Source gene:
PTPN21
Class:
LIG_APCC_ABBA_1
Location:
930:935
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9578
ASA_SCORE:
47.7
COIL:
0.8007
CONS_SCORE:
0.6789
DSS_SCORE:
0.3027
HELIX:
0.0765
FCONS_SCORE:
1.1994
RIG_SCORE:
0.8382
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.D929Y
TCGA-AA-3977
COAD
TCGA
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.D929Y
DO8730
COAD
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.P932L
TCGA-D6-6516
HNSC
TCGA
VLPYDD
LIG_APCC_ABBA_1
0.6471
p.P932L
DO15623
HNSC
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.6471
p.P932S
TCGA-D6-6516
HNSC
TCGA
VLPYDD
LIG_APCC_ABBA_1
0.6752
p.P932S
DO15623
HNSC
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.6752
p.Q928K
TCGA-EE-A17Z
SKCM
TCGA
VLPYDD
LIG_APCC_ABBA_1
0.2778
p.Q928K
DO37921
SKCM
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.2778
p.E939K
TCGA-W3-A825
SKCM
TCGA
VLPYDD
LIG_APCC_ABBA_1
0.2222
p.E939K
DO51272
SKCM
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.2222
p.R924I
DO222762
COCA
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.1667
p.V936A
DO229013
COCA
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.V936A
DO229003
COCA
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.V936A
DO229505
LAML
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.V936A
DO230659
LAML
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.V936A
DO231140
LAML
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.V936A
DO230931
LUSC
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.V936A
DO230990
LUSC
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.V936A
DO52365
LUSC
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.3056
p.F927L
DO229018
LICA
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.25
p.A922E
DO229038
LICA
ICGC
VLPYDD
LIG_APCC_ABBA_1
0.1111
p.R926Q
SIDM00534
Colorectal Carcinoma
GDSC
VLPYDD
LIG_APCC_ABBA_1
0.2222
p.R926Q
ACH-000986
Colon/Colorectal Cancer
CCLE
VLPYDD
LIG_APCC_ABBA_1
0.2222
p.R926Q
HT-115
large_intestine
COSMIC
VLPYDD
LIG_APCC_ABBA_1
0.2222
p.D935Y
SIDM00008
Ovarian Carcinoma
GDSC
VLPYDD
LIG_APCC_ABBA_1
0.7325
p.D935Y
SIDM01575
Plasma Cell Myeloma
GDSC
VLPYDD
LIG_APCC_ABBA_1
0.7325
p.D935Y
ACH-000426
Myeloma
CCLE
VLPYDD
LIG_APCC_ABBA_1
0.7325
p.D935Y
ACH-000796
Ovarian Cancer
CCLE
VLPYDD
LIG_APCC_ABBA_1
0.7325
p.E920K
SIDM00170
Head and Neck Carcinoma
GDSC
VLPYDD
LIG_APCC_ABBA_1
0.0556
p.E920K
ACH-000682
Head and Neck Cancer
CCLE
VLPYDD
LIG_APCC_ABBA_1
0.0556
Drug responses associated with PTPN21 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLPYDD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q16825
Tyrosine-protein phosphatase non-receptor type 21
LIG_APCC_ABBA_1
930:935
VLPYDD
APC,CDC20,FZR1
0.9578
More...