DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VLPYPE
Uniprot ID:
Q9UPX0
Source protein:
Protein turtle homolog B
Source gene:
IGSF9B
Class:
LIG_APCC_ABBA_1
Location:
1146:1151
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9963
ASA_SCORE:
80.9833
COIL:
0.929
CONS_SCORE:
0.4105
DSS_SCORE:
0.6512
HELIX:
0.0063
FCONS_SCORE:
1.0704
RIG_SCORE:
0.6843
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E1151K
TCGA-CG-4460
STAD
TCGA
VLPYPE
LIG_APCC_ABBA_1
0.7022
p.E1151K
DO38427
STAD
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.7022
p.P1150S
TCGA-FR-A8YC
SKCM
TCGA
VLPYPE
LIG_APCC_ABBA_1
0.5641
p.P1150S
DO50301
SKCM
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.5641
p.P1145H
DO224598
BRCA
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.3056
p.P1145H
DO1010
BRCA
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.3056
p.P1152L
DO49880
CESC
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.3056
p.P1152L
DO232761
PBCA
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.3056
p.M1142V
TCGA-55-8089
LUAD
TCGA
VLPYPE
LIG_APCC_ABBA_1
0.2222
p.M1142V
DO23690
LUAD
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.2222
p.P1155L
SIDM00933
Breast Carcinoma
GDSC
VLPYPE
LIG_APCC_ABBA_1
0.2222
p.P1155L
ACH-000856
Breast Cancer
CCLE
VLPYPE
LIG_APCC_ABBA_1
0.2222
p.P1155L
CAL-51
breast
COSMIC
VLPYPE
LIG_APCC_ABBA_1
0.2222
p.G1141V
TCGA-AJ-A3EK
UCEC
TCGA
VLPYPE
LIG_APCC_ABBA_1
0.1944
p.G1141V
DO41584
UCEC
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.1944
p.G1141V
SIDM01343
Gastric Carcinoma
GDSC
VLPYPE
LIG_APCC_ABBA_1
0.1944
p.G1141V
ACH-000764
Gastric Cancer
CCLE
VLPYPE
LIG_APCC_ABBA_1
0.1944
p.G1156R
TCGA-IN-A7NU
STAD
TCGA
VLPYPE
LIG_APCC_ABBA_1
0.1944
p.G1156R
DO51746
STAD
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.1944
p.Q1140R
TCGA-BG-A222
UCEC
TCGA
VLPYPE
LIG_APCC_ABBA_1
0.1667
p.Q1140R
DO42977
UCEC
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.1667
p.A1157E
SIDM01088
Endometrial Carcinoma
GDSC
VLPYPE
LIG_APCC_ABBA_1
0.1667
p.A1157E
ACH-000965
Endometrial/Uterine Cancer
CCLE
VLPYPE
LIG_APCC_ABBA_1
0.1667
p.A1157E
RL95-2
endometrium
COSMIC
VLPYPE
LIG_APCC_ABBA_1
0.1667
p.H1158Q
DO7436
CLLE
ICGC
VLPYPE
LIG_APCC_ABBA_1
0.1389
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Drug responses associated with IGSF9B mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VLPYPE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9UPX0
Protein turtle homolog B
LIG_APCC_ABBA_1
1146:1151
VLPYPE
APC,CDC20,FZR1
0.9963
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