DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VLTPQLS
Uniprot ID:
O75298
Source protein:
Reticulon-2
Source gene:
RTN2
Class:
DEG_SCF_FBW7_1
Location:
202:208
E3 ligase:
FBXW7
DEGRON score:
0.9982
ASA_SCORE:
77.9143
COIL:
0.8791
CONS_SCORE:
0.4305
DSS_SCORE:
0.8262
HELIX:
0.0337
FCONS_SCORE:
1.1048
RIG_SCORE:
0.627
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.T218A
TCGA-B5-A5OC
UCEC
TCGA
VLTPQLS
DEG_SCF_FBW7_1
0.0556
p.T218A
DO52405
UCEC
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.0556
p.G217S
TCGA-BH-A0HF
BRCA
TCGA
VLTPQLS
DEG_SCF_FBW7_1
0.0833
p.G217S
DO1749
BRCA
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.0833
p.P205S
TCGA-D3-A1QB
SKCM
TCGA
VLTPQLS
DEG_SCF_FBW7_1
0.6752
p.P205S
DO47573
SKCM
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.6752
p.Q206K
TCGA-D3-A8GI
SKCM
TCGA
VLTPQLS
DEG_SCF_FBW7_1
0.5833
p.Q206K
DO50284
SKCM
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.5833
p.G210C
TCGA-DS-A0VK
CESC
TCGA
VLTPQLS
DEG_SCF_FBW7_1
0.2778
p.G210C
DO6256
CESC
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.2778
p.G212W
TCGA-ER-A195
SKCM
TCGA
VLTPQLS
DEG_SCF_FBW7_1
0.2222
p.E201K
TCGA-G4-6586
COAD
TCGA
VLTPQLS
DEG_SCF_FBW7_1
0.3056
p.E201K
DO9698
COAD
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.3056
p.T195N
DO219917
DLBC
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.1389
p.P218T
DO220562
KICH
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.0556
p.S198P
DO229056
LICA
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.6667
p.A199D
DO229009
LICA
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.6944
p.Y192H
DO44802
LICA
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.0556
p.T195I
DO220885
MELA
ICGC
VLTPQLS
DEG_SCF_FBW7_1
0.1389
p.P209L
SIDM00238
Ovarian Carcinoma
GDSC
VLTPQLS
DEG_SCF_FBW7_1
0.3056
p.P209L
ACH-000947
Ovarian Cancer
CCLE
VLTPQLS
DEG_SCF_FBW7_1
0.3056
p.P209L
OVK-18
ovary
COSMIC
VLTPQLS
DEG_SCF_FBW7_1
0.3056
p.A196V
NCI-H2172
lung
COSMIC
VLTPQLS
DEG_SCF_FBW7_1
0.1667
Drug responses associated with RTN2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLTPQLS
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O75298
Reticulon-2
DEG_SCF_FBW7_1
202:208
VLTPQLS
FBXW7
0.9982
More...