DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
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CGC
Degron:
VLVFVE
Uniprot ID:
P52848
Source protein:
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
Source gene:
NDST1
Class:
LIG_APCC_ABBA_1
Location:
85:90
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.6529
ASA_SCORE:
13.15
COIL:
0.046
CONS_SCORE:
0.531
DSS_SCORE:
0.1122
HELIX:
0.005
FCONS_SCORE:
1.2822
RIG_SCORE:
0.9365
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P78H
TCGA-D7-A6EZ
STAD
TCGA
VLVFVE
LIG_APCC_ABBA_1
0.1389
p.P78H
DO50119
STAD
ICGC
VLVFVE
LIG_APCC_ABBA_1
0.1389
p.R80C
TCGA-NH-A5IV
COAD
TCGA
VLVFVE
LIG_APCC_ABBA_1
0.1944
p.R80C
DO49095
COAD
ICGC
VLVFVE
LIG_APCC_ABBA_1
0.1944
p.R80C
SIDM00063
Melanoma
GDSC
VLVFVE
LIG_APCC_ABBA_1
0.1944
p.G97C
DO229029
LICA
ICGC
VLVFVE
LIG_APCC_ABBA_1
0.1389
p.G97C
DO229031
LICA
ICGC
VLVFVE
LIG_APCC_ABBA_1
0.1389
p.F88L
DO231120
LUSC
ICGC
VLVFVE
LIG_APCC_ABBA_1
0.6981
p.E90D
DO33070
PACA
ICGC
VLVFVE
LIG_APCC_ABBA_1
0.5647
p.T81R
SIDM01473
Plasma Cell Myeloma
GDSC
VLVFVE
LIG_APCC_ABBA_1
0.2222
p.T81R
ACH-000541
Myeloma
CCLE
VLVFVE
LIG_APCC_ABBA_1
0.2222
Drug responses associated with NDST1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VLVFVE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
P52848
Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
LIG_APCC_ABBA_1
85:90
VLVFVE
APC,CDC20,FZR1
0.6529
More...