DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VNIYRD
Uniprot ID:
Q96D46
Source protein:
60S ribosomal export protein NMD3
Source gene:
NMD3
Class:
LIG_APCC_ABBA_1
Location:
456:461
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9958
ASA_SCORE:
70.9667
COIL:
0.5547
CONS_SCORE:
0.5143
DSS_SCORE:
0.3897
HELIX:
0.3063
FCONS_SCORE:
1.1393
RIG_SCORE:
0.7861
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V456D
DO46591
OV
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.7785
p.K454I
DO50813
LIRI
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.7222
p.I458M
TCGA-EY-A1G8
UCEC
TCGA
VNIYRD
LIG_APCC_ABBA_1
0.6507
p.I458M
DO43578
UCEC
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.6507
p.N457D
TCGA-A5-A0VP
UCEC
TCGA
VNIYRD
LIG_APCC_ABBA_1
0.5821
p.N457D
DO42600
UCEC
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.5821
p.N455H
SIDM00845
Burkitt's Lymphoma
GDSC
VNIYRD
LIG_APCC_ABBA_1
0.3056
p.N455H
ACH-000786
Lymphoma
CCLE
VNIYRD
LIG_APCC_ABBA_1
0.3056
p.R453Q
DO33091
PACA
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.25
p.P465S
DO222644
MELA
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.2222
p.A451T
SIDM01686
Chronic Myelogenous Leukemia
GDSC
VNIYRD
LIG_APCC_ABBA_1
0.1944
p.E450K
SIDM01578
Bladder Carcinoma
GDSC
VNIYRD
LIG_APCC_ABBA_1
0.1667
p.E450K
ACH-000862
Bladder Cancer
CCLE
VNIYRD
LIG_APCC_ABBA_1
0.1667
p.E448G
DO50951
LICA
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.1111
p.E447K
TCGA-G2-A3IE
BLCA
TCGA
VNIYRD
LIG_APCC_ABBA_1
0.0833
p.E447K
DO767
BLCA
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.0833
p.D471N
TCGA-VS-A8EK
CESC
TCGA
VNIYRD
LIG_APCC_ABBA_1
0.0556
p.D471N
DO51623
CESC
ICGC
VNIYRD
LIG_APCC_ABBA_1
0.0556
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Drug responses associated with NMD3 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VNIYRD
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q96D46
60S ribosomal export protein NMD3
LIG_APCC_ABBA_1
456:461
VNIYRD
APC,CDC20,FZR1
0.9958
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