DegronMD: protein-targeted degradation, mutation and drug response to degrons
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BSML
CPH
CGC
Degron:
VNPFPD
Uniprot ID:
Q9NS86
Source protein:
LanC-like protein 2
Source gene:
LANCL2
Class:
LIG_APCC_ABBA_1
Location:
25:30
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.996
ASA_SCORE:
70.0167
COIL:
0.8398
CONS_SCORE:
0.4252
DSS_SCORE:
0.3593
HELIX:
0.0903
FCONS_SCORE:
1.5215
RIG_SCORE:
0.7966
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.M19V
TCGA-A6-2675
COAD
TCGA
VNPFPD
LIG_APCC_ABBA_1
0.1667
p.M19V
DO8594
COAD
ICGC
VNPFPD
LIG_APCC_ABBA_1
0.1667
p.E16K
TCGA-EE-A29A
SKCM
TCGA
VNPFPD
LIG_APCC_ABBA_1
0.0833
p.E16K
DO37416
SKCM
ICGC
VNPFPD
LIG_APCC_ABBA_1
0.0833
p.A40T
DO229027
LICA
ICGC
VNPFPD
LIG_APCC_ABBA_1
0.0556
p.G36V
DO229032
LICA
ICGC
VNPFPD
LIG_APCC_ABBA_1
0.1667
p.G36V
DO229037
LICA
ICGC
VNPFPD
LIG_APCC_ABBA_1
0.1667
p.R22L
DO229009
LICA
ICGC
VNPFPD
LIG_APCC_ABBA_1
0.25
p.P29S
DO222363
MELA
ICGC
VNPFPD
LIG_APCC_ABBA_1
0.5641
p.A23T
SIDM00572
Gastric Carcinoma
GDSC
VNPFPD
LIG_APCC_ABBA_1
0.2778
p.A23T
ACH-000911
Gastric Cancer
CCLE
VNPFPD
LIG_APCC_ABBA_1
0.2778
p.D30H
SIDM01196
Hepatocellular Carcinoma
GDSC
VNPFPD
LIG_APCC_ABBA_1
0.7688
p.D30H
SNU-475
liver
COSMIC
VNPFPD
LIG_APCC_ABBA_1
0.7688
p.P29L
SIDM01446
Glioblastoma
GDSC
VNPFPD
LIG_APCC_ABBA_1
0.6471
p.P29L
ACH-000543
Brain Cancer
CCLE
VNPFPD
LIG_APCC_ABBA_1
0.6471
Drug responses associated with LANCL2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNPFPD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NS86
LanC-like protein 2
LIG_APCC_ABBA_1
25:30
VNPFPD
APC,CDC20,FZR1
0.996
More...