DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VNPFQD
Uniprot ID:
O15127
Source protein:
Secretory carrier-associated membrane protein 2
Source gene:
SCAMP2
Class:
LIG_APCC_ABBA_1
Location:
15:20
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9921
ASA_SCORE:
51.4333
COIL:
0.8912
CONS_SCORE:
0.4319
DSS_SCORE:
0.5628
HELIX:
0.076
FCONS_SCORE:
1.1077
RIG_SCORE:
0.7282
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A29T
TCGA-55-8512
LUAD
TCGA
VNPFQD
LIG_APCC_ABBA_1
0.0833
p.A29T
DO23635
LUAD
ICGC
VNPFQD
LIG_APCC_ABBA_1
0.0833
p.D11N
TCGA-5P-A9KC
KIRP
TCGA
VNPFQD
LIG_APCC_ABBA_1
0.2222
p.D11N
DO223954
KIRP
ICGC
VNPFQD
LIG_APCC_ABBA_1
0.2222
p.A29D
TCGA-AB-2827
LAML
TCGA
VNPFQD
LIG_APCC_ABBA_1
0.0833
p.A29D
DO22032
LAML
ICGC
VNPFQD
LIG_APCC_ABBA_1
0.0833
p.L26M
TCGA-CV-A6K2
HNSC
TCGA
VNPFQD
LIG_APCC_ABBA_1
0.1667
p.L26M
DO52079
HNSC
ICGC
VNPFQD
LIG_APCC_ABBA_1
0.1667
p.P8S
DO222749
MELA
ICGC
VNPFQD
LIG_APCC_ABBA_1
0.1389
p.P8H
DO37515
SKCM
ICGC
VNPFQD
LIG_APCC_ABBA_1
0.1389
p.V13M
ACH-001843
Bile Duct Cancer
CCLE
VNPFQD
LIG_APCC_ABBA_1
0.2778
Drug responses associated with SCAMP2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VNPFQD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O15127
Secretory carrier-associated membrane protein 2
LIG_APCC_ABBA_1
15:20
VNPFQD
APC,CDC20,FZR1
0.9921
More...