DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VPLHLD
Uniprot ID:
Q659C4
Source protein:
La-related protein 1B
Source gene:
LARP1B
Class:
LIG_APCC_ABBA_1
Location:
79:84
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9993
ASA_SCORE:
74.0833
COIL:
0.7427
CONS_SCORE:
0.4003
DSS_SCORE:
0.5721
HELIX:
0.1553
FCONS_SCORE:
1.2524
RIG_SCORE:
0.7736
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A73S
TCGA-A5-A0G1
UCEC
TCGA
VPLHLD
LIG_APCC_ABBA_1
0.1667
p.H82Y
TCGA-GM-A2D9
BRCA
TCGA
VPLHLD
LIG_APCC_ABBA_1
0.6118
p.H82Y
DO4810
BRCA
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.6118
p.H82R
DO228374
LICA
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.8244
p.V85F
DO229029
LICA
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.3056
p.G94C
DO25699
LUAD
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.0556
p.G94V
DO232861
NACA
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.0556
p.R70H
DO232761
PBCA
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.0833
p.V87I
DO47819
STAD
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.25
p.A73D
DO229229
THCA
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.1667
p.G73C
DO42472
UCEC
ICGC
VPLHLD
LIG_APCC_ABBA_1
0.1667
p.V79A
SIDM00431
T-Lymphoblastic Leukemia
GDSC
VPLHLD
LIG_APCC_ABBA_1
0.6936
p.V79A
ACH-000918
Leukemia
CCLE
VPLHLD
LIG_APCC_ABBA_1
0.6936
p.V79A
MOLT-16
haematopoietic_and_lymphoid_tissue
COSMIC
VPLHLD
LIG_APCC_ABBA_1
0.6936
p.P94A
SIDM00302
Other Solid Cancers
GDSC
VPLHLD
LIG_APCC_ABBA_1
0.0556
p.P94A
ACH-002149
Ovarian Cancer
CCLE
VPLHLD
LIG_APCC_ABBA_1
0.0556
p.P94A
KGN
ovary
COSMIC
VPLHLD
LIG_APCC_ABBA_1
0.0556
p.R70C
SIDM01664
Prostate Carcinoma
GDSC
VPLHLD
LIG_APCC_ABBA_1
0.0833
p.R70C
ACH-000952
Prostate Cancer
CCLE
VPLHLD
LIG_APCC_ABBA_1
0.0833
Drug responses associated with LARP1B mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPLHLD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q659C4
La-related protein 1B
LIG_APCC_ABBA_1
79:84
VPLHLD
APC,CDC20,FZR1
0.9993
More...