DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VPMYSD
Uniprot ID:
O60318
Source protein:
Germinal-center associated nuclear protein
Source gene:
MCM3AP
Class:
LIG_APCC_ABBA_1
Location:
1072:1077
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9921
ASA_SCORE:
74.9
COIL:
0.7967
CONS_SCORE:
0.2883
DSS_SCORE:
0.7104
HELIX:
0.1678
FCONS_SCORE:
1.0371
RIG_SCORE:
0.6973
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.A1081V
TCGA-19-5956
GBM
TCGA
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.A1081V
DO13863
GBM
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.A1081V
DO227905
PBCA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.A1081V
DO229542
UTCA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.E1078K
TCGA-39-5031
LUSC
TCGA
VPMYSD
LIG_APCC_ABBA_1
0.3056
p.E1078K
TCGA-FD-A43P
BLCA
TCGA
VPMYSD
LIG_APCC_ABBA_1
0.3056
p.E1078K
TCGA-IB-7651
PAAD
TCGA
VPMYSD
LIG_APCC_ABBA_1
0.3056
p.E1078K
DO44049
BLCA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.3056
p.E1078K
DO26526
LUSC
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.3056
p.E1078K
DO46657
PAAD
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.3056
p.P1069A
TCGA-AA-3715
COAD
TCGA
VPMYSD
LIG_APCC_ABBA_1
0.25
p.P1069A
DO8018
COAD
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.25
p.P1068S
TCGA-AA-3715
COAD
TCGA
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.P1068S
DO8018
COAD
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.V1062M
DO229346
LAML
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM00434
Plasma Cell Myeloma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM00232
Kidney Carcinoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM00577
Neuroblastoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM00315
Glioblastoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM00040
Gastric Carcinoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM00619
Thyroid Gland Carcinoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM00549
B-Lymphoblastic Leukemia
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.V1062M
SIDM01658
Unknown
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.0556
p.D1085E
DO228952
LICA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.1111
p.A1081E
DO228952
LICA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.A1081E
DO229018
LICA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.2222
p.P1067T
DO229015
LICA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.1944
p.P1066T
DO229031
LICA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.1667
p.D1079E
DO229234
THCA
ICGC
VPMYSD
LIG_APCC_ABBA_1
0.2778
p.P1073T
SIDM00388
B-Cell Non-Hodgkin's Lymphoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.5919
p.P1073T
ACH-002272
Lymphoma
CCLE
VPMYSD
LIG_APCC_ABBA_1
0.5919
p.P1073T
MHH-PREB-1
haematopoietic_and_lymphoid_tissue
COSMIC
VPMYSD
LIG_APCC_ABBA_1
0.5919
p.S1076Y
SIDM00953
Small Cell Lung Carcinoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.6009
p.S1076Y
SIDM00092
Ovarian Carcinoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.6009
p.S1076Y
SIDM00310
Mesothelioma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.6009
p.V1072M
SIDM00542
Glioblastoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.6097
p.V1072M
D-392MG
central_nervous_system
COSMIC
VPMYSD
LIG_APCC_ABBA_1
0.6097
p.E1065Q
SIDM00727
Non-Small Cell Lung Carcinoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.1389
p.E1065Q
ACH-000951
Lung Cancer
CCLE
VPMYSD
LIG_APCC_ABBA_1
0.1389
p.E1065Q
NCI-H2342
lung
COSMIC
VPMYSD
LIG_APCC_ABBA_1
0.1389
p.P1067L
SIDM00217
Colorectal Carcinoma
GDSC
VPMYSD
LIG_APCC_ABBA_1
0.1944
p.P1067L
SNU-1040
large_intestine
COSMIC
VPMYSD
LIG_APCC_ABBA_1
0.1944
Drug responses associated with MCM3AP mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPMYSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60318
Germinal-center associated nuclear protein
LIG_APCC_ABBA_1
1072:1077
VPMYSD
APC,CDC20,FZR1
0.9921
More...