DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VPPFVD
Uniprot ID:
Q9NVP1
Source protein:
ATP-dependent RNA helicase DDX18
Source gene:
DDX18
Class:
LIG_APCC_ABBA_1
Location:
617:622
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.801
ASA_SCORE:
62.3833
COIL:
0.9035
CONS_SCORE:
0.5208
DSS_SCORE:
0.2015
HELIX:
0.0247
FCONS_SCORE:
1.3453
RIG_SCORE:
0.8453
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.F615L
TCGA-76-6664
GBM
TCGA
VPPFVD
LIG_APCC_ABBA_1
0.2778
p.F615L
DO11310
GBM
ICGC
VPPFVD
LIG_APCC_ABBA_1
0.2778
p.P619S
TCGA-A5-A0G2
UCEC
TCGA
VPPFVD
LIG_APCC_ABBA_1
0.6752
p.P619S
DO41235
UCEC
ICGC
VPPFVD
LIG_APCC_ABBA_1
0.6752
p.V609A
TCGA-DA-A95Y
SKCM
TCGA
VPPFVD
LIG_APCC_ABBA_1
0.1111
p.V609A
DO223908
SKCM
ICGC
VPPFVD
LIG_APCC_ABBA_1
0.1111
p.Q608R
TCGA-F4-6570
COAD
TCGA
VPPFVD
LIG_APCC_ABBA_1
0.0833
p.Q608R
DO10443
COAD
ICGC
VPPFVD
LIG_APCC_ABBA_1
0.0833
p.K631N
DO229029
LICA
ICGC
VPPFVD
LIG_APCC_ABBA_1
0.1944
p.S627I
DO229028
LICA
ICGC
VPPFVD
LIG_APCC_ABBA_1
0.6389
p.V609F
DO229041
LICA
ICGC
VPPFVD
LIG_APCC_ABBA_1
0.1111
Drug responses associated with DDX18 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPPFVD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9NVP1
ATP-dependent RNA helicase DDX18
LIG_APCC_ABBA_1
617:622
VPPFVD
APC,CDC20,FZR1
0.801
More...