DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VPVFDE
Uniprot ID:
Q8N465
Source protein:
D-2-hydroxyglutarate dehydrogenase, mitochondrial
Source gene:
D2HGDH
Class:
LIG_APCC_ABBA_1
Location:
140:145
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.5648
ASA_SCORE:
51.85
COIL:
0.7403
CONS_SCORE:
0.6572
DSS_SCORE:
0.1693
HELIX:
0.0095
FCONS_SCORE:
0.9477
RIG_SCORE:
0.8948
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P141A
TCGA-12-0829
GBM
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.6392
p.M153T
TCGA-76-4935
GBM
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.1111
p.V142I
TCGA-AX-A0J1
UCEC
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.5965
p.P141L
TCGA-D3-A1QA
SKCM
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.6471
p.P141L
SIDM01228
Melanoma
GDSC
VPVFDE
LIG_APCC_ABBA_1
0.6471
p.P141L
ACH-000931
Skin Cancer
CCLE
VPVFDE
LIG_APCC_ABBA_1
0.6471
p.P141L
ACH-001024
Skin Cancer
CCLE
VPVFDE
LIG_APCC_ABBA_1
0.6471
p.R155W
TCGA-EO-A22U
UCEC
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.0556
p.R152H
TCGA-IB-7651
PAAD
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.1389
p.E145K
TCGA-IG-A51D
ESCA
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.7022
p.T150I
TCGA-L5-A8NH
ESCA
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.1944
p.S139N
TCGA-ZF-AA4W
BLCA
TCGA
VPVFDE
LIG_APCC_ABBA_1
0.3056
p.F155Y
DO5500
BRCA
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.0556
p.V134M
DO219795
LGG
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.1667
p.V145L
DO229026
LICA
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.6765
p.G131V
DO23414
LINC
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.0833
p.R143S
DO45465
LUSC
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.7427
p.F149S
DO219466
SKCM
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.2222
p.R143M
DO229259
THCA
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.8632
p.A148V
DO42023
UCEC
ICGC
VPVFDE
LIG_APCC_ABBA_1
0.25
p.P140L
SW1417
large_intestine
COSMIC
VPVFDE
LIG_APCC_ABBA_1
0.7582
p.C152S
HCC1569
breast
COSMIC
VPVFDE
LIG_APCC_ABBA_1
0.1389
Drug responses associated with D2HGDH mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VPVFDE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8N465
D-2-hydroxyglutarate dehydrogenase, mitochondrial
LIG_APCC_ABBA_1
140:145
VPVFDE
APC,CDC20,FZR1
0.5648
More...