DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VRPYSD
Uniprot ID:
O60563
Source protein:
Cyclin-T1
Source gene:
CCNT1
Class:
LIG_APCC_ABBA_1
Location:
684:689
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9542
ASA_SCORE:
71
COIL:
0.6888
CONS_SCORE:
0.3888
DSS_SCORE:
0.4929
HELIX:
0.217
FCONS_SCORE:
1.0205
RIG_SCORE:
0.8002
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.P686S
TCGA-97-A4M5
LUAD
TCGA
VRPYSD
LIG_APCC_ABBA_1
0.6752
p.P686S
DO218938
LUAD
ICGC
VRPYSD
LIG_APCC_ABBA_1
0.6752
p.T676I
TCGA-A8-A09Z
BRCA
TCGA
VRPYSD
LIG_APCC_ABBA_1
0.1111
p.T676I
DO5521
BRCA
ICGC
VRPYSD
LIG_APCC_ABBA_1
0.1111
p.S695Y
DO228978
LICA
ICGC
VRPYSD
LIG_APCC_ABBA_1
0.1667
p.I698M
SIDM00884
Breast Carcinoma
GDSC
VRPYSD
LIG_APCC_ABBA_1
0.0833
p.I698M
ACH-000699
Breast Cancer
CCLE
VRPYSD
LIG_APCC_ABBA_1
0.0833
p.I698M
HCC1395
breast
COSMIC
VRPYSD
LIG_APCC_ABBA_1
0.0833
p.R685H
SIDM00258
Neuroblastoma
GDSC
VRPYSD
LIG_APCC_ABBA_1
0.7133
p.R685H
ACH-002279
Neuroblastoma
CCLE
VRPYSD
LIG_APCC_ABBA_1
0.7133
p.R685H
NB12
autonomic_ganglia
COSMIC
VRPYSD
LIG_APCC_ABBA_1
0.7133
p.R685C
SIDM01566
Hodgkin's Lymphoma
GDSC
VRPYSD
LIG_APCC_ABBA_1
0.719
p.R685C
ACH-000063
Non-Cancerous
CCLE
VRPYSD
LIG_APCC_ABBA_1
0.719
p.R694Q
ACH-000973
Bladder Cancer
CCLE
VRPYSD
LIG_APCC_ABBA_1
0.1944
Drug responses associated with CCNT1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRPYSD
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
O60563
Cyclin-T1
LIG_APCC_ABBA_1
684:689
VRPYSD
APC,CDC20,FZR1
0.9542
More...