DegronMD: protein-targeted degradation, mutation and drug response to degrons
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CGC
Degron:
VRRSLSPVF
Uniprot ID:
Q8IYJ3
Source protein:
Synaptotagmin-like protein 1
Source gene:
SYTL1
Class:
DEG_APCC_DBOX_1
Location:
465:473
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.582
ASA_SCORE:
77.7
COIL:
0.6938
CONS_SCORE:
0.6986
DSS_SCORE:
0.2616
HELIX:
0.0127
FCONS_SCORE:
0.9548
RIG_SCORE:
0.761
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R467H
TCGA-2W-A8YY
CESC
TCGA
VRRSLSPVF
DEG_APCC_DBOX_1
0.7133
p.R459H
TCGA-AG-3584
READ
TCGA
VRRSLSPVF
DEG_APCC_DBOX_1
0.1667
p.R455H
DO223732
CESC
ICGC
VRRSLSPVF
DEG_APCC_DBOX_1
0.0556
p.G469C
DO229008
LICA
ICGC
VRRSLSPVF
DEG_APCC_DBOX_1
0.76
p.E481K
DO25444
LUAD
ICGC
VRRSLSPVF
DEG_APCC_DBOX_1
0.1111
p.S483F
DO37679
SKCM
ICGC
VRRSLSPVF
DEG_APCC_DBOX_1
0.0556
p.R476C
DO40978
UCEC
ICGC
VRRSLSPVF
DEG_APCC_DBOX_1
0.6944
p.R459C
SIDM00365
Small Cell Lung Carcinoma
GDSC
VRRSLSPVF
DEG_APCC_DBOX_1
0.1667
p.V478M
SIDM00951
T-Lymphoblastic Leukemia
GDSC
VRRSLSPVF
DEG_APCC_DBOX_1
0.1944
p.V478M
ACH-002222
Leukemia
CCLE
VRRSLSPVF
DEG_APCC_DBOX_1
0.1944
p.V478M
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
VRRSLSPVF
DEG_APCC_DBOX_1
0.1944
p.S470G
SIDM00980
Gastric Carcinoma
GDSC
VRRSLSPVF
DEG_APCC_DBOX_1
0.6993
p.S470G
ACH-000948
Gastric Cancer
CCLE
VRRSLSPVF
DEG_APCC_DBOX_1
0.6993
p.S470G
23132-87
stomach
COSMIC
VRRSLSPVF
DEG_APCC_DBOX_1
0.6993
p.S458G
23132-87
stomach
COSMIC
VRRSLSPVF
DEG_APCC_DBOX_1
0.1389
p.P472S
MOLT-4
haematopoietic_and_lymphoid_tissue
COSMIC
VRRSLSPVF
DEG_APCC_DBOX_1
0.6752
p.V466M
CTV-1
haematopoietic_and_lymphoid_tissue
COSMIC
VRRSLSPVF
DEG_APCC_DBOX_1
0.7208
Drug responses associated with SYTL1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VRRSLSPVF
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8IYJ3
Synaptotagmin-like protein 1
DEG_APCC_DBOX_1
465:473
VRRSLSPVF
APC,CDC20,FZR1
0.582
More...