DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VRSHLAPLW
Uniprot ID:
Q9Y639
Source protein:
Neuroplastin
Source gene:
NPTN
Class:
DEG_APCC_DBOX_1
Location:
333:341
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.7923
ASA_SCORE:
71.0444
COIL:
0.6969
CONS_SCORE:
0.8495
DSS_SCORE:
0.0039
HELIX:
0.0304
FCONS_SCORE:
1.176
RIG_SCORE:
0.9321
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R334W
TCGA-B5-A3FC
UCEC
TCGA
VRSHLAPLW
DEG_APCC_DBOX_1
0.8634
p.R334Q
TCGA-4Z-AA89
BLCA
TCGA
VRSHLAPLW
DEG_APCC_DBOX_1
0.7329
p.P342H
TCGA-AD-6889
COAD
TCGA
VRSHLAPLW
DEG_APCC_DBOX_1
0.3056
p.R332M
TCGA-EE-A2M8
SKCM
TCGA
VRSHLAPLW
DEG_APCC_DBOX_1
0.3056
p.P342L
TCGA-FW-A3R5
SKCM
TCGA
VRSHLAPLW
DEG_APCC_DBOX_1
0.3056
p.L344F
TCGA-FS-A1Z3
SKCM
TCGA
VRSHLAPLW
DEG_APCC_DBOX_1
0.25
p.W328L
DO37635
SKCM
ICGC
VRSHLAPLW
DEG_APCC_DBOX_1
0.1944
p.V327A
TCGA-W3-AA1V
SKCM
TCGA
VRSHLAPLW
DEG_APCC_DBOX_1
0.1667
p.L326I
DO8463
COAD
ICGC
VRSHLAPLW
DEG_APCC_DBOX_1
0.1389
p.L326F
DO37406
SKCM
ICGC
VRSHLAPLW
DEG_APCC_DBOX_1
0.1389
p.S324C
DO219042
BLCA
ICGC
VRSHLAPLW
DEG_APCC_DBOX_1
0.0833
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Drug responses associated with NPTN mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VRSHLAPLW
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9Y639
Neuroplastin
DEG_APCC_DBOX_1
333:341
VRSHLAPLW
APC,CDC20,FZR1
0.7923
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