DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VSTPATT
Uniprot ID:
Q8N3V7
Source protein:
Synaptopodin
Source gene:
SYNPO
Class:
DEG_SCF_FBW7_1
Location:
404:410
E3 ligase:
FBXW7
DEGRON score:
0.9982
ASA_SCORE:
83.3857
COIL:
0.9501
CONS_SCORE:
0.4773
DSS_SCORE:
0.4113
HELIX:
0.0157
FCONS_SCORE:
0.8249
RIG_SCORE:
0.7208
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R395K
TCGA-BH-A2L8
BRCA
TCGA
VSTPATT
DEG_SCF_FBW7_1
0.0833
p.R395K
DO44242
BRCA
ICGC
VSTPATT
DEG_SCF_FBW7_1
0.0833
p.S415F
TCGA-RP-A694
SKCM
TCGA
VSTPATT
DEG_SCF_FBW7_1
0.1944
p.S415F
DO51269
SKCM
ICGC
VSTPATT
DEG_SCF_FBW7_1
0.1944
p.V416M
DO38551
STAD
ICGC
VSTPATT
DEG_SCF_FBW7_1
0.1667
p.R406W
DO41331
UCEC
ICGC
VSTPATT
DEG_SCF_FBW7_1
0.8634
p.S397R
SIDM00460
B-Cell Non-Hodgkin's Lymphoma
GDSC
VSTPATT
DEG_SCF_FBW7_1
0.1389
p.E404D
ACH-000783
Breast Cancer
CCLE
VSTPATT
DEG_SCF_FBW7_1
0.6758
p.E404D
CAMA-1
breast
COSMIC
VSTPATT
DEG_SCF_FBW7_1
0.6758
p.D397N
ACH-001190
Skin Cancer
CCLE
VSTPATT
DEG_SCF_FBW7_1
0.1389
p.D397N
SK-MEL-2
skin
COSMIC
VSTPATT
DEG_SCF_FBW7_1
0.1389
p.V399A
ACH-001610
Brain Cancer
CCLE
VSTPATT
DEG_SCF_FBW7_1
0.1944
p.G412R
JHU-011
upper_aerodigestive_tract
COSMIC
VSTPATT
DEG_SCF_FBW7_1
0.2778
p.G412R
NCI-H23
lung
COSMIC
VSTPATT
DEG_SCF_FBW7_1
0.2778
Drug responses associated with SYNPO mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VSTPATT
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8N3V7
Synaptopodin
DEG_SCF_FBW7_1
404:410
VSTPATT
FBXW7
0.9982
More...