DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VSVYQE
Uniprot ID:
Q6ZNL6
Source protein:
FYVE, RhoGEF and PH domain-containing protein 5
Source gene:
FGD5
Class:
LIG_APCC_ABBA_1
Location:
560:565
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.8017
ASA_SCORE:
65.7
COIL:
0.5852
CONS_SCORE:
0.322
DSS_SCORE:
0.4694
HELIX:
0.0235
FCONS_SCORE:
0.8549
RIG_SCORE:
0.7497
Degron related mutations and impact score
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Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.V560A
ACH-002926
Unknown
CCLE
VSVYQE
LIG_APCC_ABBA_1
0.6936
p.V562M
SIDM00090
Ovarian Carcinoma
GDSC
VSVYQE
LIG_APCC_ABBA_1
0.6097
p.Q564K
TCGA-CV-7252
HNSC
TCGA
VSVYQE
LIG_APCC_ABBA_1
0.5833
p.Q564K
ACH-000901
Lung Cancer
CCLE
VSVYQE
LIG_APCC_ABBA_1
0.5833
p.P566T
SIDM00598
Squamous Cell Lung Carcinoma
GDSC
VSVYQE
LIG_APCC_ABBA_1
0.3056
p.P566T
ACH-000843
Lung Cancer
CCLE
VSVYQE
LIG_APCC_ABBA_1
0.3056
p.P566T
HARA
lung
COSMIC
VSVYQE
LIG_APCC_ABBA_1
0.3056
p.P566R
SIDM00598
Squamous Cell Lung Carcinoma
GDSC
VSVYQE
LIG_APCC_ABBA_1
0.3056
p.P566R
ACH-000843
Lung Cancer
CCLE
VSVYQE
LIG_APCC_ABBA_1
0.3056
p.P566R
HARA
lung
COSMIC
VSVYQE
LIG_APCC_ABBA_1
0.3056
p.E567Q
TCGA-UY-A78K
BLCA
TCGA
VSVYQE
LIG_APCC_ABBA_1
0.2778
p.E567K
TCGA-XX-A89A
BRCA
TCGA
VSVYQE
LIG_APCC_ABBA_1
0.2778
p.A558T
DO41871
UCEC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.2778
p.A558T
DO41235
UCEC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.2778
p.A558T
SW48
large_intestine
COSMIC
VSVYQE
LIG_APCC_ABBA_1
0.2778
p.A558V
Jurkat
haematopoietic_and_lymphoid_tissue
COSMIC
VSVYQE
LIG_APCC_ABBA_1
0.2778
p.E557D
TCGA-AX-A06F
UCEC
TCGA
VSVYQE
LIG_APCC_ABBA_1
0.25
p.E557D
TCGA-EO-A22U
UCEC
TCGA
VSVYQE
LIG_APCC_ABBA_1
0.25
p.A556P
DO26425
LUSC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.2222
p.A569T
DO42472
UCEC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.2222
p.L570P
DO42033
UCEC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.1944
p.A554V
DO43186
UCEC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.1667
p.A554V
DO42608
UCEC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.1667
p.A554V
DO41235
UCEC
ICGC
VSVYQE
LIG_APCC_ABBA_1
0.1667
p.D572G
TCGA-A5-A0G2
UCEC
TCGA
VSVYQE
LIG_APCC_ABBA_1
0.1389
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Drug responses associated with FGD5 mutations
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Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
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All proteins holding degron of VSVYQE
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Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q6ZNL6
FYVE, RhoGEF and PH domain-containing protein 5
LIG_APCC_ABBA_1
560:565
VSVYQE
APC,CDC20,FZR1
0.8017
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