DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
VVPFQE
Uniprot ID:
Q9Y566
Source protein:
SH3 and multiple ankyrin repeat domains protein 1
Source gene:
SHANK1
Class:
LIG_APCC_ABBA_1
Location:
407:412
E3 ligase:
APC,CDC20,FZR1
DEGRON score:
0.9223
ASA_SCORE:
81.6
COIL:
0.6638
CONS_SCORE:
0.6182
DSS_SCORE:
0.5166
HELIX:
0.0958
FCONS_SCORE:
1.1283
RIG_SCORE:
0.7607
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.E397V
TCGA-39-5034
LUSC
TCGA
VVPFQE
LIG_APCC_ABBA_1
0.0556
p.E397V
DO26854
LUSC
ICGC
VVPFQE
LIG_APCC_ABBA_1
0.0556
p.V408L
TCGA-56-A62T
LUSC
TCGA
VVPFQE
LIG_APCC_ABBA_1
0.5654
p.V408L
DO219144
LUSC
ICGC
VVPFQE
LIG_APCC_ABBA_1
0.5654
p.Q405K
TCGA-BH-A0DG
BRCA
TCGA
VVPFQE
LIG_APCC_ABBA_1
0.2778
p.Q405K
DO1257
BRCA
ICGC
VVPFQE
LIG_APCC_ABBA_1
0.2778
p.P409A
DO52504
EOPC
ICGC
VVPFQE
LIG_APCC_ABBA_1
0.7503
p.R419W
DO45299
LIRI
ICGC
VVPFQE
LIG_APCC_ABBA_1
0.1389
p.I399M
DO231155
LUSC
ICGC
VVPFQE
LIG_APCC_ABBA_1
0.1111
p.R420Q
DO32835
PACA
ICGC
VVPFQE
LIG_APCC_ABBA_1
0.1111
p.R403Q
ACH-001852
Bile Duct Cancer
CCLE
VVPFQE
LIG_APCC_ABBA_1
0.2222
Drug responses associated with SHANK1 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of VVPFQE
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q9Y566
SH3 and multiple ankyrin repeat domains protein 1
LIG_APCC_ABBA_1
407:412
VVPFQE
APC,CDC20,FZR1
0.9223
More...