DegronMD: protein-targeted degradation, mutation and drug response to degrons
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Degron:
YLDLTPVK
Uniprot ID:
Q8N4X5
Source protein:
Actin filament-associated protein 1-like 2
Source gene:
AFAP1L2
Class:
DEG_SCF_SKP2-CKS1_1
Location:
537:544
E3 ligase:
SKP2,CSK1
DEGRON score:
0.9994
ASA_SCORE:
76.1875
COIL:
0.761
CONS_SCORE:
0.4738
DSS_SCORE:
0.4794
HELIX:
0.1648
FCONS_SCORE:
1.3693
RIG_SCORE:
0.7836
Degron related mutations and impact score
Mutation
Sample
Cancer
Dataset
Degron
Degron class
Impact score
p.R535Q
TCGA-CV-7568
HNSC
TCGA
YLDLTPVK
DEG_SCF_SKP2-CKS1_1
0.2778
p.R535Q
SIDM01943
Colorectal Carcinoma
GDSC
YLDLTPVK
DEG_SCF_SKP2-CKS1_1
0.2778
p.P550S
TCGA-EA-A3HQ
CESC
TCGA
YLDLTPVK
DEG_SCF_SKP2-CKS1_1
0.1667
p.P550S
DO6317
CESC
ICGC
YLDLTPVK
DEG_SCF_SKP2-CKS1_1
0.1667
p.H548N
DO228974
LICA
ICGC
YLDLTPVK
DEG_SCF_SKP2-CKS1_1
0.2222
p.R551C
DO47317
SKCM
ICGC
YLDLTPVK
DEG_SCF_SKP2-CKS1_1
0.1389
Drug responses associated with AFAP1L2 mutations
Sample
Cancer
Mutation (In Degron?)
Dataset
Drug
IC50
All proteins holding degron of YLDLTPVK
Uniprot ID
Source protein
Degron class
Location
Hit
E3 ligase
Degron score
Detail
Q8N4X5
Actin filament-associated protein 1-like 2
DEG_SCF_SKP2-CKS1_1
537:544
YLDLTPVK
SKP2,CSK1
0.9994
More...