CleftGeneDB-Search

Gene: SIX1

Basic information

Tag	Content
Uniprot ID	E5DCJ4
Entrez ID	100156847
Genbank protein ID	ADQ54113.1; ADQ54114.1;
Genbank nucleotide ID	NM_001199718.1
Ensembl protein ID	ENSSSCP00000005467
Ensembl nucleotide ID	ENSSSCG00000005087
Gene name	Six homeobox 1
Gene symbol	SIX1
Organism	Sus scrofa
NCBI taxa ID	9823
Cleft type
Developmental stage
Data sources	Homology search
Reference
Functional description
Sequence	MSMLPSFGFT QEQVACVCEV LQQGGNLERL GRFLWSLPAC DHLHKNESVL KAKAVVAFHR 60 GNFRELYKIL ESHQFSPHNH PKLQQLWLKA HYVEAEKLRG RPLGAVGKYR VRRKFPLPRT 120 IWDGEETSYC FKEKSRGVLR EWYAHNPYPS PREKRELAEA TGLTTTQVSN WFKNRRQRDR 180 AAEAKERENT ENNNSSSNKQ NQLSPLEGGK PLMSSSEEEF SPPQSPDQNS VLLLQGNMGH 240 ARSSNYSLPG LTASQPTHGL QAHQHQLQDS LLGPLTSSLV DLGS 284

Abbreviation :
CLO : cleft lip only. CPO : cleft palate only. CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.

Protein disorder information

Orthologous information

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Relation	Gene symbol	Entrez ID	UniProt ID	Cleft type	Species	Evidence	Details
1:1 ortholog	Six1	20471	Q62231	CPO	Mus musculus	Publication	More>>
1:1 ortholog	SIX1		Q08DI4		Bos taurus	Prediction	More>>
1:1 ortholog	SIX1	490719	J9P3S7		Canis lupus familiaris	Prediction	More>>
1:1 ortholog	SIX1	106502564	A0A452G009		Capra hircus	Prediction	More>>
1:1 ortholog	SIX1	6495	Q15475		Homo sapiens	Prediction	More>>
1:1 ortholog	SIX1	452952	H2Q8E8		Pan troglodytes	Prediction	More>>
1:1 ortholog	SIX1	100156847	E5DCJ4		Sus scrofa	Prediction	More>>
1:1 ortholog	SIX1	100349440	G1T717		Oryctolagus cuniculus	Prediction	More>>
1:1 ortholog	Six1	114634	G3V970		Rattus norvegicus	Prediction	More>>

Showing 1 to 9 of 9 entries

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Gene ontology

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GO ID	GO Term
GO:0000122	negative regulation of transcription by RNA polymerase II
GO:0000976	transcription regulatory region sequence-specific DNA binding
GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001657	ureteric bud development
GO:0001658	branching involved in ureteric bud morphogenesis
GO:0001759	organ induction
GO:0001822	kidney development
GO:0003151	outflow tract morphogenesis
GO:0003682	chromatin binding
GO:0003700	DNA-binding transcription factor activity
GO:0005634	nucleus
GO:0005654	nucleoplasm
GO:0005667	transcription factor complex
GO:0005730	nucleolus
GO:0006355	regulation of transcription, DNA-templated
GO:0007389	pattern specification process
GO:0007519	skeletal muscle tissue development
GO:0007605	sensory perception of sound