| Tag | Content |
|---|---|
| Uniprot ID | Q8VI24 |
| Entrez ID | 212712 |
| Genbank protein ID | BAC98080.1; AAL37172.1; |
| Genbank nucleotide ID | XM_017319630.1; NM_139146.2; XM_017319631.1; |
| Ensembl protein ID | ENSMUSP00000110057; ENSMUSP00000046067; |
| Ensembl nucleotide ID | ENSMUSG00000038331 |
| Gene name | DNA-binding protein SATB2 |
| Gene symbol | Satb2 |
| Organism | Mus musculus |
| NCBI taxa ID | 10090 |
| Cleft type | CPO |
| Developmental stage | E12.5, E14.25, E13.5, E14.5, E16.5 |
| Data sources | Manually collected |
| Reference | 16960803; 16751105; |
| Functional description | Binds to DNA, at nuclear matrix- or scaffold-associated regions. Thought to recognize the sugar-phosphate structure of double-stranded DNA. Transcription factor controlling nuclear gene expression, by binding to matrix attachment regions (MARs) of DNA and inducing a local chromatin-loop remodeling. Acts as a docking site for several chromatin remodeling enzymes and also by recruiting corepressors (HDACs) or coactivators (HATs) directly to promoters and enhancers. Required for the initiation of the upper-layer neurons (UL1) specific genetic program and for the inactivation of deep-layer neurons (DL) and UL2 specific genes, probably by modulating Bcl11b expression. Repressor of Ctip2 and regulatory determinant of corticocortical connections in the developing cerebral cortex. May play an important role in palate formation. Acts as a molecular node in a transcriptional network regulating skeletal development and osteoblast differentiation. |
| Sequence | MERRSESPCL RDSPDRRSGS PDVKGPPPVK VARLEQNGSP MGARGRPNGA VAKAVGGLMI 60 PVFCVVEQLD GSLEYDNREE HAEFVLVRKD VLFSQLVETA LLALGYSHSS AAQAQGIIKL 120 GRWNPLPLSY VTDAPDATVA DMLQDVYHVV TLKIQLQSCS KLEDLPAEQW NHATVRNALK 180 ELLKEMNQST LAKECPLSQS MISSIVNSTY YANVSATKCQ EFGRWYKKYK KIKVERVERE 240 NLSDYCVLGQ RPMHLPNMNQ LASLGKTNEQ SPHSQIHHST PIRNQVPALQ PIMSPGLLSP 300 QLSPQLVRQQ IAMAHLINQQ IAVSRLLAHQ HPQAINQQFL NHPPIPRAVK PEPTNSSVEV 360 SPDIYQQVRD ELKRASVSQA VFARVAFNRT QGLLSEILRK EEDPRTASQS LLVNLRAMQN 420 FLNLPEVERD RIYQDERERS MNPNVSMVSS ASSSPSSSRT PQAKTSTPTT DLPIKVDGAN 480 VNITAAIYDE IQQEMKRAKV SQALFAKVAA NKSQGWLCEL LRWKENPSPE NRTLWENLCT 540 IRRFLNLPQH ERDVIYEEES RHHHSERMQH VVQLPPEPVQ VLHRQQSQPT KESSPPREEA 600 PPPPPPTEDS CAKKPRSRTK ISLEALGILQ SFIHDVGLYP DQEAIHTLSA QLDLPKHTII 660 KFFQNQRYHV KHHGKLKEHL GSAVDVAEYK DEELLTESEE NDSEEGSEEM YKVEAEEENA 720 DKSKAAPAET DQR 733 |
Abbreviation :
CLO : cleft lip only. CPO : cleft palate only.
CLP : cleft lip and palate. CL/P : cleft lip with/without cleft palate.
For humans: CL/P, CLO, CPO, and CLP. For mice: CLO, CLP, and CPO.
| Relation | Gene symbol | Entrez ID | UniProt ID | Cleft type | Developmental stage | Species | Evidence | Details |
|---|---|---|---|---|---|---|---|---|
| 1:1 ortholog | SATB2 | 102171018 | A0A452FN88 | Capra hircus | Prediction | More>> | ||
| 1:1 ortholog | SATB2 | 23314 | Q9UPW6 | Homo sapiens | Publication | More>> | ||
| 1:1 ortholog | Satb2 | 212712 | Q8VI24 | CPO | E12.5, E14.25, E13.5, E14.5, E16.5 | Mus musculus | Publication | More>> |
| 1:1 ortholog | SATB2 | 459856 | A0A2I3SX19 | Pan troglodytes | Prediction | More>> | ||
| 1:1 ortholog | SATB2 | I3LRU7 | Sus scrofa | Prediction | More>> | |||
| 1:1 ortholog | SATB2 | 100351405 | G1SXR2 | Oryctolagus cuniculus | Prediction | More>> | ||
| 1:1 ortholog | Satb2 | 501145 | D3ZJ19 | Rattus norvegicus | Prediction | More>> | ||
| 1:1 ortholog | satb2 | 563435 | A8WIP9 | Danio rerio | Prediction | More>> |
| GO ID | GO Term | Evidence |
|---|---|---|
| GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding | IDA |
| GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding | IBA |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | IDA |
| GO:0001227 | DNA-binding transcription repressor activity, RNA polymerase II-specific | IC |
| GO:0003682 | chromatin binding | IDA |
| GO:0005515 | protein binding | IPI |
| GO:0043565 | sequence-specific DNA binding | IGI |
| GO ID | GO Term | Evidence |
|---|---|---|
| GO:0000122 | negative regulation of transcription by RNA polymerase II | IMP |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | IBA |
| GO:0001764 | neuron migration | IMP |
| GO:0002076 | osteoblast development | IGI |
| GO:0002076 | osteoblast development | IMP |
| GO:0006338 | chromatin remodeling | IDA |
| GO:0006338 | chromatin remodeling | IBA |
| GO:0006357 | regulation of transcription by RNA polymerase II | IBA |
| GO:0009880 | embryonic pattern specification | IMP |
| GO:0010468 | regulation of gene expression | IMP |
| GO:0021902 | commitment of neuronal cell to specific neuron type in forebrain | IGI |
| GO:0021902 | commitment of neuronal cell to specific neuron type in forebrain | IMP |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | IDA |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | IGI |
| GO:0048704 | embryonic skeletal system morphogenesis | IMP |
| GO:0051216 | cartilage development | IMP |
| GO:0060021 | roof of mouth development | IMP |
| GO:0071310 | cellular response to organic substance | IDA |
| GO ID | GO Term | Evidence |
|---|---|---|
| GO:0000118 | histone deacetylase complex | IDA |
| GO:0000790 | nuclear chromatin | IC |
| GO:0005634 | nucleus | IDA |
| GO:0005634 | nucleus | ISO |
| GO:0005634 | nucleus | IBA |
| GO:0005654 | nucleoplasm | ISO |
| GO:0005654 | nucleoplasm | TAS |
| GO:0005667 | transcription factor complex | IDA |
| GO:0016363 | nuclear matrix | IEA |
| Reactome ID | Reactome Term | Evidence |
|---|---|---|
| R-MMU-2990846 | SUMOylation | IEA |
| R-MMU-3108232 | SUMO E3 ligases SUMOylate target proteins | IEA |
| R-MMU-392499 | Metabolism of proteins | IEA |
| R-MMU-4551638 | SUMOylation of chromatin organization proteins | IEA |
| R-MMU-597592 | Post-translational protein modification | IEA |
| Keyword ID | Keyword Term |
|---|---|
| KW-0025 | Alternative splicing |
| KW-0156 | Chromatin regulator |
| KW-0160 | Chromosomal rearrangement |
| KW-0217 | Developmental protein |
| KW-0238 | DNA-binding |
| KW-0371 | Homeobox |
| KW-1017 | Isopeptide bond |
| KW-0539 | Nucleus |
| KW-0597 | Phosphoprotein |
| KW-1185 | Reference proteome |
| KW-0677 | Repeat |
| KW-0678 | Repressor |
| KW-0804 | Transcription |
| KW-0805 | Transcription regulation |
| KW-0832 | Ubl conjugation |