Gene Page: GABARAP

Summary
GeneID  11337
Symbol  GABARAP
Synonyms  FLJ25768|MGC120154|MGC120155|MM46
Description  GABA(A) receptor-associated protein
See related  HGNC:4067|MIM:605125|Ensembl:ENSG00000170296|HPRD:05496|
Locus tag  -
Gene type  protein-coding
Map location  17p13.1
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 2 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0050811GABA receptor bindingIPIGABA (GO term level: 5)9892355 
GO:0005515protein bindingIPI11096062 |11146101 
GO:0008017microtubule bindingIEA-
GO:0048487beta-tubulin bindingIDA9892355 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0007268synaptic transmissionTASneuron, Synap, Neurotransmitter (GO term level: 6)9892355 
GO:0000226microtubule cytoskeleton organizationIEA-
GO:0006605protein targetingTAS9892355 
GO:0015031protein transportIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0000139Golgi membraneIEA-
GO:0000421autophagic vacuole membraneIDA15169837 
GO:0005794Golgi apparatusIEA-
GO:0005874microtubuleIEA-
GO:0005875microtubule associated complexIEA-
GO:0005790smooth endoplasmic reticulumIEA-
GO:0005737cytoplasmIEA-
GO:0005764lysosomeIEA-
GO:0005886plasma membraneTAS9892355 
GO:0015629actin cytoskeletonIEA-
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
ATG3APG3 | APG3-LIKE | APG3L | DKFZp564M1178 | FLJ22125 | MGC15201 | PC3-96ATG3 autophagy related 3 homolog (S. cerevisiae)-HPRD11825910 
ATG4BAPG4B | AUTL1 | MGC1353ATG4 autophagy related 4 homolog B (S. cerevisiae)Two-hybridBioGRID16169070 
ATG7APG7-LIKE | APG7L | DKFZp434N0735 | GSA7ATG7 autophagy related 7 homolog (S. cerevisiae)-HPRD11890701 
GABARAPFLJ25768 | MGC120154 | MGC120155 | MM46GABA(A) receptor-associated protein-HPRD,BioGRID11779480 |12367594 
GABRG2CAE2 | ECA2 | GEFSP3gamma-aminobutyric acid (GABA) A receptor, gamma 2-HPRD,BioGRID9892355 
GPHNGEPH | GPH | GPHRYN | KIAA1385gephyrin-HPRD10900017 
HDAC5FLJ90614 | HD5 | NY-CO-9histone deacetylase 5Two-hybridBioGRID16169070 
NSFSKD2N-ethylmaleimide-sensitive factor-HPRD11461150 
TFRCCD71 | TFR | TFR1 | TRFRtransferrin receptor (p90, CD71)-HPRD,BioGRID11997026 
TUBB3MC1R | TUBB4 | beta-4tubulin, beta 3Two-hybridBioGRID16169070 
ULK1ATG1 | FLJ38455 | UNC51 | Unc51.1unc-51-like kinase 1 (C. elegans)-HPRD,BioGRID11146101 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
KEGG_REGULATION_OF_AUTOPHAGY 3530All SZGR genes in this pathway
BIOCARTA_GABA_PATHWAY 1010All SZGR genes in this pathway
GARY_CD5_TARGETS_UP 473314All SZGR genes in this pathway
ENK_UV_RESPONSE_KERATINOCYTE_UP 530342All SZGR genes in this pathway
BERENJENO_TRANSFORMED_BY_RHOA_DN 394258All SZGR genes in this pathway
LOPEZ_MBD_TARGETS 957597All SZGR genes in this pathway
KOYAMA_SEMA3B_TARGETS_DN 411249All SZGR genes in this pathway
BENPORATH_MYC_MAX_TARGETS 775494All SZGR genes in this pathway
BASSO_B_LYMPHOCYTE_NETWORK 14396All SZGR genes in this pathway
YAGI_AML_RELAPSE_PROGNOSIS 3524All SZGR genes in this pathway
PENG_GLUCOSE_DEPRIVATION_DN 169112All SZGR genes in this pathway
HASLINGER_B_CLL_WITH_17P13_DELETION 2115All SZGR genes in this pathway
YAGI_AML_SURVIVAL 12987All SZGR genes in this pathway
MA_PITUITARY_FETAL_VS_ADULT_DN 1917All SZGR genes in this pathway
MARSON_BOUND_BY_FOXP3_UNSTIMULATED 1229713All SZGR genes in this pathway
ALONSO_METASTASIS_UP 198128All SZGR genes in this pathway
DANG_BOUND_BY_MYC 1103714All SZGR genes in this pathway
KARLSSON_TGFB1_TARGETS_DN 207139All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP 756494All SZGR genes in this pathway
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP 682440All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_3_UP 430288All SZGR genes in this pathway
HUANG_GATA2_TARGETS_UP 14996All SZGR genes in this pathway
KRIEG_KDM3A_TARGETS_NOT_HYPOXIA 208107All SZGR genes in this pathway
FORTSCHEGGER_PHF8_TARGETS_DN 784464All SZGR genes in this pathway
MIZUSHIMA_AUTOPHAGOSOME_FORMATION 1915All SZGR genes in this pathway
ZWANG_TRANSIENTLY_UP_BY_1ST_EGF_PULSE_ONLY 1839928All SZGR genes in this pathway
ZWANG_EGF_INTERVAL_DN 214124All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-140420426m8hsa-miR-140brainAGUGGUUUUACCCUAUGGUAG
miR-455402408m8hsa-miR-455UAUGUGCCUUUGGACUACAUCG
miR-542-3p2622681Ahsa-miR-542-3pUGUGACAGAUUGAUAACUGAAA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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