Gene Page

Gene Page: RNF44

Summary

GeneID

22838

Symbol

RNF44

Synonyms

KIAA1100

Description

ring finger protein 44

Locus tag

Gene type

protein-coding

Map location

5q35.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.0276

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
UDAYAKUMAR_MED1_TARGETS_DN	240	171	All SZGR genes in this pathway
LINDGREN_BLADDER_CANCER_CLUSTER_3_DN	229	142	All SZGR genes in this pathway
PUJANA_ATM_PCC_NETWORK	1442	892	All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_DN	1024	594	All SZGR genes in this pathway
BUYTAERT_PHOTODYNAMIC_THERAPY_STRESS_UP	811	508	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_48HR_UP	180	125	All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_1	528	324	All SZGR genes in this pathway
ZHANG_BREAST_CANCER_PROGENITORS_UP	425	253	All SZGR genes in this pathway
JISON_SICKLE_CELL_DISEASE_DN	181	97	All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP	756	494	All SZGR genes in this pathway
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP	682	440	All SZGR genes in this pathway
KIM_ALL_DISORDERS_CALB1_CORR_UP	548	370	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
IKEDA_MIR30_TARGETS_UP	116	87	All SZGR genes in this pathway
PHONG_TNF_RESPONSE_VIA_P38_PARTIAL	160	106	All SZGR genes in this pathway
ZWANG_EGF_INTERVAL_DN	214	124	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
let-7/98	2006	2012	1A	hsa-let-7a^brain	UGAGGUAGUAGGUUGUAUAGUU
				hsa-let-7b^brain	UGAGGUAGUAGGUUGUGUGGUU
				hsa-let-7c^brain	UGAGGUAGUAGGUUGUAUGGUU
				hsa-let-7d^brain	AGAGGUAGUAGGUUGCAUAGU
				hsa-let-7e^brain	UGAGGUAGGAGGUUGUAUAGU
				hsa-let-7f^brain	UGAGGUAGUAGAUUGUAUAGUU
				hsa-miR-98^brain	UGAGGUAGUAAGUUGUAUUGUU
				hsa-let-7g^SZ	UGAGGUAGUAGUUUGUACAGU
				hsa-let-7i^brain	UGAGGUAGUAGUUUGUGCUGU
miR-101	1493	1499	1A	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-125/351	1375	1382	1A,m8	hsa-miR-125b^brain	UCCCUGAGACCCUAACUUGUGA
miR-125/351	1375	1382	1A,m8	hsa-miR-125a^brain	UCCCUGAGACCCUUUAACCUGUG
miR-141/200a	1532	1538	m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	1532	1538	m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-144	1493	1499	1A	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-148/152	1026	1032	m8	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-182	176	182	m8	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-188	2274	2280	1A	hsa-miR-188	CAUCCCUUGCAUGGUGGAGGGU
miR-19	1990	1996	1A	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	1990	1996	1A	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-214	1367	1373	m8	hsa-miR-214^brain	ACAGCAGGCACAGACAGGCAG
miR-22	1686	1692	1A	hsa-miR-22^brain	AAGCUGCCAGUUGAAGAACUGU
miR-221/222	2118	2124	1A	hsa-miR-221^brain	AGCUACAUUGUCUGCUGGGUUUC
miR-221/222	2118	2124	1A	hsa-miR-222^brain	AGCUACAUCUGGCUACUGGGUCUC
miR-25/32/92/363/367	158	164	1A	hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
				hsa-miR-25^brain	CAUUGCACUUGUCUCGGUCUGA
				hsa-miR-32	UAUUGCACAUUACUAAGUUGC
				hsa-miR-92	UAUUGCACUUGUCCCGGCCUG
				hsa-miR-367	AAUUGCACUUUAGCAAUGGUGA
				hsa-miR-92b^SZ	UAUUGCACUCGUCCCGGCCUC
miR-30-5p	1826	1832	m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-324-5p	1379	1385	m8	hsa-miR-324-5p	CGCAUCCCCUAGGGCAUUGGUGU
miR-34/449	1019	1025	1A	hsa-miR-34a^brain	UGGCAGUGUCUUAGCUGGUUGUU
				hsa-miR-34c	AGGCAGUGUAGUUAGCUGAUUGC
				hsa-miR-449	UGGCAGUGUAUUGUUAGCUGGU
				hsa-miR-449b	AGGCAGUGUAUUGUUAGCUGGC
miR-361	1013	1019	1A	hsa-miR-361^brain	UUAUCAGAAUCUCCAGGGGUAC
miR-410	1928	1934	1A	hsa-miR-410	AAUAUAACACAGAUGGCCUGU
miR-455	1339	1345	m8	hsa-miR-455	UAUGUGCCUUUGGACUACAUCG
miR-485-3p	2293	2299	m8	hsa-miR-485-3p	GUCAUACACGGCUCUCCUCUCU
miR-499	1488	1494	m8	hsa-miR-499	UUAAGACUUGCAGUGAUGUUUAA
miR-504	133	140	1A,m8	hsa-miR-504	AGACCCUGGUCUGCACUCUAU
miR-505	1534	1541	1A,m8	hsa-miR-505	GUCAACACUUGCUGGUUUCCUC
miR-9	186	192	1A	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.