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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: TBC1D9B

Summary

GeneID

23061

Symbol

TBC1D9B

Synonyms

FLJ41880|KIAA0676|MGC157757

Description

TBC1 domain family, member 9B (with GRAM domain)

Locus tag

Gene type

protein-coding

Map location

5q35.3

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIA

genome scan meta-analysis (All samples)

Psr: 0.0276

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

BRCA2

0.91

0.72

RBL1

0.91

0.79

C6orf167

0.90

0.81

KNTC1

0.90

0.84

CENPI

0.89

0.73

ATAD2

0.89

0.82

MCM8

0.88

0.75

TIMELESS

0.88

0.77

NCAPD3

0.88

0.85

C4orf21

0.88

0.78

Top 10 negatively co-expressed genes

AF347015.31

-0.51

-0.74

MT-CO2

-0.51

-0.75

FXYD1

-0.50

-0.73

AF347015.27

-0.50

-0.71

AF347015.33

-0.50

-0.70

IFI27

-0.49

-0.72

AF347015.8

-0.49

-0.73

C5orf53

-0.48

-0.60

S100B

-0.48

-0.67

MT-CYB

-0.48

-0.69

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005097

Rab GTPase activator activity

IEA

GO:0005096

GTPase activator activity

IEA

GO:0005509

calcium ion binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0032313

regulation of Rab GTPase activity

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005622

intracellular

IEA

GO:0016020

membrane

IEA

GO:0016021

integral to membrane

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
PARENT_MTOR_SIGNALING_UP	567	375	All SZGR genes in this pathway
LIU_SOX4_TARGETS_DN	309	191	All SZGR genes in this pathway
GAZDA_DIAMOND_BLACKFAN_ANEMIA_ERYTHROID_DN	493	298	All SZGR genes in this pathway
PROVENZANI_METASTASIS_DN	136	94	All SZGR genes in this pathway
STARK_PREFRONTAL_CORTEX_22Q11_DELETION_DN	517	309	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_48HR_DN	504	323	All SZGR genes in this pathway
DEBIASI_APOPTOSIS_BY_REOVIRUS_INFECTION_DN	287	208	All SZGR genes in this pathway
BAELDE_DIABETIC_NEPHROPATHY_DN	434	302	All SZGR genes in this pathway
CREIGHTON_ENDOCRINE_THERAPY_RESISTANCE_3	720	440	All SZGR genes in this pathway
CHANDRAN_METASTASIS_DN	306	191	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
KRIEG_HYPOXIA_NOT_VIA_KDM3A	770	480	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124.1	680	687	1A,m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	680	686	1A	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	680	686	1A	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-128	668	674	m8	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	668	674	m8	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.