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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: NFASC

Summary

GeneID

23114

Symbol

NFASC

Synonyms

DKFZp686P2250|FLJ46866|KIAA0756|NF|NRCAML

Description

neurofascin homolog (chicken)

Locus tag

RP11-494K3.1

Gene type

protein-coding

Map location

1q32.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0024

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

GPR176

0.77

0.81

EVI5L

0.77

0.78

AC132186.2

0.77

0.81

GPR68

0.75

0.83

SYT3

0.75

0.81

CNRIP1

0.75

0.78

MYO16

0.75

0.74

GNAZ

0.74

0.73

SESN2

0.74

0.76

TRAF5

0.73

0.77

Top 10 negatively co-expressed genes

AF347015.21

-0.50

-0.44

AF347015.2

-0.50

-0.43

MT-CO2

-0.50

-0.42

AF347015.31

-0.49

-0.42

AF347015.8

-0.48

-0.41

GNG11

-0.47

-0.51

AF347015.33

-0.47

-0.38

MT-CYB

-0.46

-0.38

AC098691.2

-0.46

-0.49

AP002478.3

-0.46

-0.47

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007155

cell adhesion

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016021

integral to membrane

IEA

GO:0005886

plasma membrane

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
CNTNAP1	CASPR \| CNTNAP \| NRXN4 \| P190	contactin associated protein 1	-	HPRD	11839274
DCX	DBCN \| DC \| LISX \| SCLH \| XLIS	doublecortin	-	HPRD,BioGRID	12223548
NRCAM	KIAA0343 \| MGC138845 \| MGC138846	neuronal cell adhesion molecule	-	HPRD	11724816
SCN1B	GEFSP1	sodium channel, voltage-gated, type I, beta	-	HPRD	11470829
SCN3B	HSA243396 \| SCNB3	sodium channel, voltage-gated, type III, beta	-	HPRD	11470829
SDCBP	MDA-9 \| ST1 \| SYCL \| TACIP18	syndecan binding protein (syntenin)	-	HPRD	11152476
SDCBP2	FLJ12256 \| SITAC18 \| ST-2	syndecan binding protein (syntenin) 2	-	HPRD	11152476

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
KEGG_CELL_ADHESION_MOLECULES_CAMS	134	93	All SZGR genes in this pathway
DAVICIONI_TARGETS_OF_PAX_FOXO1_FUSIONS_UP	255	177	All SZGR genes in this pathway
SENESE_HDAC3_TARGETS_DN	536	332	All SZGR genes in this pathway
LEE_NEURAL_CREST_STEM_CELL_UP	146	99	All SZGR genes in this pathway
FALVELLA_SMOKERS_WITH_LUNG_CANCER	80	52	All SZGR genes in this pathway
CHEOK_RESPONSE_TO_MERCAPTOPURINE_DN	22	15	All SZGR genes in this pathway
ASTON_MAJOR_DEPRESSIVE_DISORDER_DN	160	110	All SZGR genes in this pathway
MANALO_HYPOXIA_UP	207	145	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP	1691	1088	All SZGR genes in this pathway
LINDVALL_IMMORTALIZED_BY_TERT_DN	80	56	All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_48HR_DN	504	323	All SZGR genes in this pathway
BAELDE_DIABETIC_NEPHROPATHY_DN	434	302	All SZGR genes in this pathway
WALLACE_PROSTATE_CANCER_RACE_UP	299	167	All SZGR genes in this pathway
ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN	940	425	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway
RATTENBACHER_BOUND_BY_CELF1	467	251	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-10	2039	2046	1A,m8	hsa-miR-10a	UACCCUGUAGAUCCGAAUUUGUG
miR-10	2039	2046	1A,m8	hsa-miR-10b	UACCCUGUAGAACCGAAUUUGU
miR-124.1	1331	1337	m8	hsa-miR-124a	UUAAGGCACGCGGUGAAUGCCA
miR-124/506	1331	1337	1A	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	1331	1337	1A	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-128	5355	5361	1A	hsa-miR-128a	UCACAGUGAACCGGUCUCUUUU
miR-128	5355	5361	1A	hsa-miR-128b	UCACAGUGAACCGGUCUCUUUC
miR-137	5561	5568	1A,m8	hsa-miR-137	UAUUGCUUAAGAAUACGCGUAG
miR-141/200a	5697	5703	m8	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	5697	5703	m8	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-150	5581	5587	1A	hsa-miR-150	UCUCCCAACCCUUGUACCAGUG
miR-182	5730	5736	m8	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-190	1252	1259	1A,m8	hsa-miR-190	UGAUAUGUUUGAUAUAUUAGGU
miR-200bc/429	4860	4866	1A	hsa-miR-200b	UAAUACUGCCUGGUAAUGAUGAC
				hsa-miR-200c	UAAUACUGCCGGGUAAUGAUGG
				hsa-miR-429	UAAUACUGUCUGGUAAAACCGU
miR-27	5355	5362	1A,m8	hsa-miR-27a^brain	UUCACAGUGGCUAAGUUCCGC
miR-27	5355	5362	1A,m8	hsa-miR-27b^brain	UUCACAGUGGCUAAGUUCUGC
miR-329	1095	1101	m8	hsa-miR-329^brain	AACACACCUGGUUAACCUCUUU
miR-339	2038	2044	m8	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-370	6110	6116	m8	hsa-miR-370^brain	GCCUGCUGGGGUGGAACCUGG
miR-381	6238	6244	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-9	1578	1584	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.