Gene Page: HLA-DQA2
Summary ?
| GeneID | 3118 |
| Symbol | HLA-DQA2 |
| Synonyms | DX-ALPHA|HLA-DXA |
| Description | major histocompatibility complex, class II, DQ alpha 2 |
| Reference | MIM:613503|HGNC:HGNC:4943|HPRD:09982| |
| Gene type | protein-coding |
| Map location | 6p21.3 |
| Pascal p-value | 1.698E-9 |
| Fetal beta | -0.512 |
| eGene | Anterior cingulate cortex BA24 Caudate basal ganglia Cerebellar Hemisphere Cerebellum Cortex Frontal Cortex BA9 Hippocampus Hypothalamus Nucleus accumbens basal ganglia Putamen basal ganglia Myers' cis & trans Meta |
Gene in Data Sources
| Gene set name | Method of gene set | Description | Info |
|---|---|---|---|
| CV:GWAScat | Genome-wide Association Studies | This data set includes 560 SNPs associated with schizophrenia. A total of 486 genes were mapped to these SNPs within 50kb. | |
| CV:GWASdb | Genome-wide Association Studies | GWASdb records for schizophrenia | |
| CV:PGCnp | Genome-wide Association Study | GWAS | |
| PMID:cooccur | High-throughput literature-search | Systematic search in PubMed for genes co-occurring with SCZ keywords. A total of 3027 genes were included. | |
| GSMA_I | Genome scan meta-analysis | Psr: 0.033 | |
| Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: schizophrenia,schizophrenias | Click to show details |
Section I. Genetics and epigenetics annotation
eQTL annotation
| SNP ID | Chromosome | Position | eGene | Gene Entrez ID | pvalue | qvalue | TSS distance | eQTL type |
|---|---|---|---|---|---|---|---|---|
| rs16869851 | chr4 | 20690056 | HLA-DQA2 | 3118 | 0.13 | trans | ||
| rs114861997 | 6 | 32459359 | HLA-DQA2 | ENSG00000237541.3 | 7.16E-8 | 0.01 | -249760 | gtex_brain_ba24 |
| rs9268849 | 6 | 32429327 | HLA-DQA2 | ENSG00000237541.3 | 3.508E-7 | 0.01 | -279792 | gtex_brain_putamen_basal |
| rs9268853 | 6 | 32429643 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -279476 | gtex_brain_putamen_basal |
| rs9268858 | 6 | 32429758 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -279361 | gtex_brain_putamen_basal |
| rs9268860 | 6 | 32429825 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -279294 | gtex_brain_putamen_basal |
| rs9268864 | 6 | 32430326 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -278793 | gtex_brain_putamen_basal |
| rs7747529 | 6 | 32431124 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -277995 | gtex_brain_putamen_basal |
| rs9268884 | 6 | 32431640 | HLA-DQA2 | ENSG00000237541.3 | 7.864E-7 | 0.01 | -277479 | gtex_brain_putamen_basal |
| rs9268889 | 6 | 32431886 | HLA-DQA2 | ENSG00000237541.3 | 9.106E-7 | 0.01 | -277233 | gtex_brain_putamen_basal |
| rs9268905 | 6 | 32432077 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -277042 | gtex_brain_putamen_basal |
| rs9268906 | 6 | 32432181 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -276938 | gtex_brain_putamen_basal |
| rs9268923 | 6 | 32432835 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -276284 | gtex_brain_putamen_basal |
| rs544369585 | 6 | 32432992 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -276127 | gtex_brain_putamen_basal |
| rs2395185 | 6 | 32433167 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -275952 | gtex_brain_putamen_basal |
| rs2395186 | 6 | 32433192 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -275927 | gtex_brain_putamen_basal |
| rs9268947 | 6 | 32433741 | HLA-DQA2 | ENSG00000237541.3 | 5.299E-7 | 0.01 | -275378 | gtex_brain_putamen_basal |
| rs9268960 | 6 | 32434130 | HLA-DQA2 | ENSG00000237541.3 | 3.067E-7 | 0.01 | -274989 | gtex_brain_putamen_basal |
| rs9268961 | 6 | 32434135 | HLA-DQA2 | ENSG00000237541.3 | 2.411E-7 | 0.01 | -274984 | gtex_brain_putamen_basal |
| rs9268963 | 6 | 32434149 | HLA-DQA2 | ENSG00000237541.3 | 3.066E-7 | 0.01 | -274970 | gtex_brain_putamen_basal |
| rs9268965 | 6 | 32434240 | HLA-DQA2 | ENSG00000237541.3 | 4.302E-7 | 0.01 | -274879 | gtex_brain_putamen_basal |
| rs9268969 | 6 | 32434349 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -274770 | gtex_brain_putamen_basal |
| rs9268970 | 6 | 32434361 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -274758 | gtex_brain_putamen_basal |
| rs9391781 | 6 | 32434850 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -274269 | gtex_brain_putamen_basal |
| rs28654725 | 6 | 32435542 | HLA-DQA2 | ENSG00000237541.3 | 3.962E-7 | 0.01 | -273577 | gtex_brain_putamen_basal |
| rs28895224 | 6 | 32435556 | HLA-DQA2 | ENSG00000237541.3 | 4.967E-7 | 0.01 | -273563 | gtex_brain_putamen_basal |
| rs77244909 | 6 | 32436240 | HLA-DQA2 | ENSG00000237541.3 | 4.997E-7 | 0.01 | -272879 | gtex_brain_putamen_basal |
| rs76914018 | 6 | 32436250 | HLA-DQA2 | ENSG00000237541.3 | 4.997E-7 | 0.01 | -272869 | gtex_brain_putamen_basal |
| rs28895234 | 6 | 32437050 | HLA-DQA2 | ENSG00000237541.3 | 8.071E-7 | 0.01 | -272069 | gtex_brain_putamen_basal |
| rs9368725 | 6 | 32438159 | HLA-DQA2 | ENSG00000237541.3 | 7.461E-7 | 0.01 | -270960 | gtex_brain_putamen_basal |
| rs9380306 | 6 | 32438298 | HLA-DQA2 | ENSG00000237541.3 | 7.443E-7 | 0.01 | -270821 | gtex_brain_putamen_basal |
| rs9368726 | 6 | 32438542 | HLA-DQA2 | ENSG00000237541.3 | 7.404E-7 | 0.01 | -270577 | gtex_brain_putamen_basal |
| rs9391877 | 6 | 32438867 | HLA-DQA2 | ENSG00000237541.3 | 7.406E-7 | 0.01 | -270252 | gtex_brain_putamen_basal |
| rs9405110 | 6 | 32439108 | HLA-DQA2 | ENSG00000237541.3 | 6.556E-8 | 0.01 | -270011 | gtex_brain_putamen_basal |
| rs9286790 | 6 | 32439828 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -269291 | gtex_brain_putamen_basal |
| rs9348886 | 6 | 32441008 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -268111 | gtex_brain_putamen_basal |
| rs12215261 | 6 | 32441150 | HLA-DQA2 | ENSG00000237541.3 | 1.252E-7 | 0.01 | -267969 | gtex_brain_putamen_basal |
| rs12215313 | 6 | 32441276 | HLA-DQA2 | ENSG00000237541.3 | 2.556E-8 | 0.01 | -267843 | gtex_brain_putamen_basal |
| rs9405112 | 6 | 32445600 | HLA-DQA2 | ENSG00000237541.3 | 7.61E-7 | 0.01 | -263519 | gtex_brain_putamen_basal |
| rs17209950 | 6 | 32446588 | HLA-DQA2 | ENSG00000237541.3 | 8.696E-7 | 0.01 | -262531 | gtex_brain_putamen_basal |
| rs4457186 | 6 | 32447653 | HLA-DQA2 | ENSG00000237541.3 | 1.76E-7 | 0.01 | -261466 | gtex_brain_putamen_basal |
| rs368788863 | 6 | 32451678 | HLA-DQA2 | ENSG00000237541.3 | 5.011E-7 | 0.01 | -257441 | gtex_brain_putamen_basal |
| rs71565331 | 6 | 32451693 | HLA-DQA2 | ENSG00000237541.3 | 2.52E-7 | 0.01 | -257426 | gtex_brain_putamen_basal |
| rs62405565 | 6 | 32452281 | HLA-DQA2 | ENSG00000237541.3 | 5.022E-7 | 0.01 | -256838 | gtex_brain_putamen_basal |
| rs71565340 | 6 | 32452506 | HLA-DQA2 | ENSG00000237541.3 | 5.041E-7 | 0.01 | -256613 | gtex_brain_putamen_basal |
| rs34036879 | 6 | 32453336 | HLA-DQA2 | ENSG00000237541.3 | 6.514E-7 | 0.01 | -255783 | gtex_brain_putamen_basal |
| rs150945160 | 6 | 32458463 | HLA-DQA2 | ENSG00000237541.3 | 1.137E-7 | 0.01 | -250656 | gtex_brain_putamen_basal |
| rs181332009 | 6 | 32459293 | HLA-DQA2 | ENSG00000237541.3 | 4.68E-7 | 0.01 | -249826 | gtex_brain_putamen_basal |
| rs113541465 | 6 | 32459312 | HLA-DQA2 | ENSG00000237541.3 | 8.428E-7 | 0.01 | -249807 | gtex_brain_putamen_basal |
| rs66919165 | 6 | 32459641 | HLA-DQA2 | ENSG00000237541.3 | 7.706E-7 | 0.01 | -249478 | gtex_brain_putamen_basal |
| rs68060410 | 6 | 32459679 | HLA-DQA2 | ENSG00000237541.3 | 4.557E-7 | 0.01 | -249440 | gtex_brain_putamen_basal |
| rs148630431 | 6 | 32460019 | HLA-DQA2 | ENSG00000237541.3 | 9.295E-7 | 0.01 | -249100 | gtex_brain_putamen_basal |
| rs144441217 | 6 | 32460025 | HLA-DQA2 | ENSG00000237541.3 | 9.368E-7 | 0.01 | -249094 | gtex_brain_putamen_basal |
| rs147402766 | 6 | 32460027 | HLA-DQA2 | ENSG00000237541.3 | 9.028E-7 | 0.01 | -249092 | gtex_brain_putamen_basal |
| rs75127169 | 6 | 32460082 | HLA-DQA2 | ENSG00000237541.3 | 8.007E-7 | 0.01 | -249037 | gtex_brain_putamen_basal |
| rs111499705 | 6 | 32460116 | HLA-DQA2 | ENSG00000237541.3 | 4.757E-7 | 0.01 | -249003 | gtex_brain_putamen_basal |
| rs113255123 | 6 | 32460157 | HLA-DQA2 | ENSG00000237541.3 | 5.092E-7 | 0.01 | -248962 | gtex_brain_putamen_basal |
| rs113079522 | 6 | 32460170 | HLA-DQA2 | ENSG00000237541.3 | 4.995E-7 | 0.01 | -248949 | gtex_brain_putamen_basal |
| rs113666104 | 6 | 32460222 | HLA-DQA2 | ENSG00000237541.3 | 6.243E-7 | 0.01 | -248897 | gtex_brain_putamen_basal |
| rs113420629 | 6 | 32470263 | HLA-DQA2 | ENSG00000237541.3 | 2.315E-7 | 0.01 | -238856 | gtex_brain_putamen_basal |
| rs145455664 | 6 | 32470283 | HLA-DQA2 | ENSG00000237541.3 | 4.25E-7 | 0.01 | -238836 | gtex_brain_putamen_basal |
| rs113326372 | 6 | 32471095 | HLA-DQA2 | ENSG00000237541.3 | 2.351E-7 | 0.01 | -238024 | gtex_brain_putamen_basal |
| rs115108103 | 6 | 32471599 | HLA-DQA2 | ENSG00000237541.3 | 8.872E-7 | 0.01 | -237520 | gtex_brain_putamen_basal |
| rs142007173 | 6 | 32471635 | HLA-DQA2 | ENSG00000237541.3 | 1.201E-7 | 0.01 | -237484 | gtex_brain_putamen_basal |
| rs201579467 | 6 | 32471799 | HLA-DQA2 | ENSG00000237541.3 | 3.417E-7 | 0.01 | -237320 | gtex_brain_putamen_basal |
| rs78827854 | 6 | 32472079 | HLA-DQA2 | ENSG00000237541.3 | 9.448E-7 | 0.01 | -237040 | gtex_brain_putamen_basal |
| rs146213402 | 6 | 32472231 | HLA-DQA2 | ENSG00000237541.3 | 9.12E-7 | 0.01 | -236888 | gtex_brain_putamen_basal |
| rs111992517 | 6 | 32478588 | HLA-DQA2 | ENSG00000237541.3 | 6.922E-7 | 0.01 | -230531 | gtex_brain_putamen_basal |
| rs113296631 | 6 | 32478885 | HLA-DQA2 | ENSG00000237541.3 | 8.452E-7 | 0.01 | -230234 | gtex_brain_putamen_basal |
| rs112074290 | 6 | 32479655 | HLA-DQA2 | ENSG00000237541.3 | 5.158E-7 | 0.01 | -229464 | gtex_brain_putamen_basal |
| rs113506020 | 6 | 32482261 | HLA-DQA2 | ENSG00000237541.3 | 7.078E-7 | 0.01 | -226858 | gtex_brain_putamen_basal |
| rs112207934 | 6 | 32482293 | HLA-DQA2 | ENSG00000237541.3 | 2.332E-7 | 0.01 | -226826 | gtex_brain_putamen_basal |
| rs115545331 | 6 | 32485051 | HLA-DQA2 | ENSG00000237541.3 | 4.057E-7 | 0.01 | -224068 | gtex_brain_putamen_basal |
| rs151320068 | 6 | 32490243 | HLA-DQA2 | ENSG00000237541.3 | 4.556E-7 | 0.01 | -218876 | gtex_brain_putamen_basal |
| rs182778252 | 6 | 32495761 | HLA-DQA2 | ENSG00000237541.3 | 2.027E-7 | 0.01 | -213358 | gtex_brain_putamen_basal |
| rs146130478 | 6 | 32499213 | HLA-DQA2 | ENSG00000237541.3 | 2.956E-7 | 0.01 | -209906 | gtex_brain_putamen_basal |
| rs67509241 | 6 | 32505643 | HLA-DQA2 | ENSG00000237541.3 | 6.282E-7 | 0.01 | -203476 | gtex_brain_putamen_basal |
| rs77931438 | 6 | 32505762 | HLA-DQA2 | ENSG00000237541.3 | 1.934E-7 | 0.01 | -203357 | gtex_brain_putamen_basal |
| rs74945612 | 6 | 32505901 | HLA-DQA2 | ENSG00000237541.3 | 8.051E-7 | 0.01 | -203218 | gtex_brain_putamen_basal |
| rs77891198 | 6 | 32506670 | HLA-DQA2 | ENSG00000237541.3 | 7.626E-7 | 0.01 | -202449 | gtex_brain_putamen_basal |
| rs78273580 | 6 | 32506779 | HLA-DQA2 | ENSG00000237541.3 | 5.868E-7 | 0.01 | -202340 | gtex_brain_putamen_basal |
| rs78668102 | 6 | 32507091 | HLA-DQA2 | ENSG00000237541.3 | 3.406E-7 | 0.01 | -202028 | gtex_brain_putamen_basal |
| rs143811457 | 6 | 32507112 | HLA-DQA2 | ENSG00000237541.3 | 3.43E-7 | 0.01 | -202007 | gtex_brain_putamen_basal |
| rs115466102 | 6 | 32507168 | HLA-DQA2 | ENSG00000237541.3 | 1.42E-7 | 0.01 | -201951 | gtex_brain_putamen_basal |
| rs150548684 | 6 | 32507293 | HLA-DQA2 | ENSG00000237541.3 | 5.255E-7 | 0.01 | -201826 | gtex_brain_putamen_basal |
| rs149253766 | 6 | 32507305 | HLA-DQA2 | ENSG00000237541.3 | 4.992E-7 | 0.01 | -201814 | gtex_brain_putamen_basal |
| rs76207819 | 6 | 32507365 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -201754 | gtex_brain_putamen_basal |
| rs111680800 | 6 | 32507452 | HLA-DQA2 | ENSG00000237541.3 | 4.329E-7 | 0.01 | -201667 | gtex_brain_putamen_basal |
| rs114580448 | 6 | 32507538 | HLA-DQA2 | ENSG00000237541.3 | 9.524E-7 | 0.01 | -201581 | gtex_brain_putamen_basal |
| rs79476956 | 6 | 32508173 | HLA-DQA2 | ENSG00000237541.3 | 6.862E-7 | 0.01 | -200946 | gtex_brain_putamen_basal |
| rs75387045 | 6 | 32508213 | HLA-DQA2 | ENSG00000237541.3 | 8.265E-7 | 0.01 | -200906 | gtex_brain_putamen_basal |
| rs113686014 | 6 | 32509551 | HLA-DQA2 | ENSG00000237541.3 | 5.812E-7 | 0.01 | -199568 | gtex_brain_putamen_basal |
| rs113623173 | 6 | 32510438 | HLA-DQA2 | ENSG00000237541.3 | 6.833E-7 | 0.01 | -198681 | gtex_brain_putamen_basal |
| rs138222522 | 6 | 32510733 | HLA-DQA2 | ENSG00000237541.3 | 5.969E-7 | 0.01 | -198386 | gtex_brain_putamen_basal |
| rs112628749 | 6 | 32510769 | HLA-DQA2 | ENSG00000237541.3 | 5.297E-7 | 0.01 | -198350 | gtex_brain_putamen_basal |
| rs113766057 | 6 | 32510772 | HLA-DQA2 | ENSG00000237541.3 | 6.859E-7 | 0.01 | -198347 | gtex_brain_putamen_basal |
| rs112894757 | 6 | 32510777 | HLA-DQA2 | ENSG00000237541.3 | 3.548E-7 | 0.01 | -198342 | gtex_brain_putamen_basal |
| rs115591310 | 6 | 32511009 | HLA-DQA2 | ENSG00000237541.3 | 1.659E-7 | 0.01 | -198110 | gtex_brain_putamen_basal |
| rs113049351 | 6 | 32511024 | HLA-DQA2 | ENSG00000237541.3 | 1.696E-7 | 0.01 | -198095 | gtex_brain_putamen_basal |
| rs112156463 | 6 | 32511990 | HLA-DQA2 | ENSG00000237541.3 | 4.577E-7 | 0.01 | -197129 | gtex_brain_putamen_basal |
| rs113046257 | 6 | 32512753 | HLA-DQA2 | ENSG00000237541.3 | 6.155E-7 | 0.01 | -196366 | gtex_brain_putamen_basal |
| rs116585338 | 6 | 32512812 | HLA-DQA2 | ENSG00000237541.3 | 1.893E-7 | 0.01 | -196307 | gtex_brain_putamen_basal |
| rs144230348 | 6 | 32512832 | HLA-DQA2 | ENSG00000237541.3 | 3.012E-8 | 0.01 | -196287 | gtex_brain_putamen_basal |
| rs113568276 | 6 | 32513127 | HLA-DQA2 | ENSG00000237541.3 | 7.955E-7 | 0.01 | -195992 | gtex_brain_putamen_basal |
| rs113011827 | 6 | 32513453 | HLA-DQA2 | ENSG00000237541.3 | 6.857E-7 | 0.01 | -195666 | gtex_brain_putamen_basal |
| . | 6 | 32513624 | HLA-DQA2 | ENSG00000237541.3 | 9.112E-7 | 0.01 | -195495 | gtex_brain_putamen_basal |
| rs62405631 | 6 | 32514500 | HLA-DQA2 | ENSG00000237541.3 | 9.582E-7 | 0.01 | -194619 | gtex_brain_putamen_basal |
| rs62405638 | 6 | 32516715 | HLA-DQA2 | ENSG00000237541.3 | 9.218E-7 | 0.01 | -192404 | gtex_brain_putamen_basal |
| rs62405639 | 6 | 32516724 | HLA-DQA2 | ENSG00000237541.3 | 9.218E-7 | 0.01 | -192395 | gtex_brain_putamen_basal |
| rs147317423 | 6 | 32516905 | HLA-DQA2 | ENSG00000237541.3 | 4.082E-7 | 0.01 | -192214 | gtex_brain_putamen_basal |
| rs189139309 | 6 | 32516915 | HLA-DQA2 | ENSG00000237541.3 | 5.296E-7 | 0.01 | -192204 | gtex_brain_putamen_basal |
| rs9689882 | 6 | 32517248 | HLA-DQA2 | ENSG00000237541.3 | 3.645E-7 | 0.01 | -191871 | gtex_brain_putamen_basal |
| rs111403760 | 6 | 32517303 | HLA-DQA2 | ENSG00000237541.3 | 5.888E-7 | 0.01 | -191816 | gtex_brain_putamen_basal |
| rs78055135 | 6 | 32517412 | HLA-DQA2 | ENSG00000237541.3 | 8.039E-7 | 0.01 | -191707 | gtex_brain_putamen_basal |
| rs112651699 | 6 | 32517650 | HLA-DQA2 | ENSG00000237541.3 | 4.484E-7 | 0.01 | -191469 | gtex_brain_putamen_basal |
| rs113182435 | 6 | 32518236 | HLA-DQA2 | ENSG00000237541.3 | 5.705E-7 | 0.01 | -190883 | gtex_brain_putamen_basal |
| rs140590517 | 6 | 32518282 | HLA-DQA2 | ENSG00000237541.3 | 3.958E-7 | 0.01 | -190837 | gtex_brain_putamen_basal |
| rs80250300 | 6 | 32518996 | HLA-DQA2 | ENSG00000237541.3 | 1.443E-7 | 0.01 | -190123 | gtex_brain_putamen_basal |
| rs112654908 | 6 | 32519968 | HLA-DQA2 | ENSG00000237541.3 | 8.675E-7 | 0.01 | -189151 | gtex_brain_putamen_basal |
| rs111621461 | 6 | 32520050 | HLA-DQA2 | ENSG00000237541.3 | 2.011E-7 | 0.01 | -189069 | gtex_brain_putamen_basal |
| rs113521434 | 6 | 32520460 | HLA-DQA2 | ENSG00000237541.3 | 2.317E-7 | 0.01 | -188659 | gtex_brain_putamen_basal |
| rs68038182 | 6 | 32520538 | HLA-DQA2 | ENSG00000237541.3 | 2.711E-8 | 0.01 | -188581 | gtex_brain_putamen_basal |
| rs3828853 | 6 | 32520581 | HLA-DQA2 | ENSG00000237541.3 | 7.359E-8 | 0.01 | -188538 | gtex_brain_putamen_basal |
| rs3828851 | 6 | 32520621 | HLA-DQA2 | ENSG00000237541.3 | 2.429E-7 | 0.01 | -188498 | gtex_brain_putamen_basal |
| rs557371502 | 6 | 32520639 | HLA-DQA2 | ENSG00000237541.3 | 6.936E-7 | 0.01 | -188480 | gtex_brain_putamen_basal |
| rs184578930 | 6 | 32522871 | HLA-DQA2 | ENSG00000237541.3 | 2.645E-7 | 0.01 | -186248 | gtex_brain_putamen_basal |
| rs189848075 | 6 | 32522874 | HLA-DQA2 | ENSG00000237541.3 | 2.649E-7 | 0.01 | -186245 | gtex_brain_putamen_basal |
| rs180917585 | 6 | 32523193 | HLA-DQA2 | ENSG00000237541.3 | 4.511E-7 | 0.01 | -185926 | gtex_brain_putamen_basal |
| rs186243123 | 6 | 32523194 | HLA-DQA2 | ENSG00000237541.3 | 4.467E-7 | 0.01 | -185925 | gtex_brain_putamen_basal |
| rs114852415 | 6 | 32524759 | HLA-DQA2 | ENSG00000237541.3 | 3.39E-7 | 0.01 | -184360 | gtex_brain_putamen_basal |
| rs115397315 | 6 | 32525087 | HLA-DQA2 | ENSG00000237541.3 | 6.001E-7 | 0.01 | -184032 | gtex_brain_putamen_basal |
| rs191650130 | 6 | 32525856 | HLA-DQA2 | ENSG00000237541.3 | 1.262E-7 | 0.01 | -183263 | gtex_brain_putamen_basal |
| rs192421684 | 6 | 32525868 | HLA-DQA2 | ENSG00000237541.3 | 4.349E-8 | 0.01 | -183251 | gtex_brain_putamen_basal |
| rs185074177 | 6 | 32526097 | HLA-DQA2 | ENSG00000237541.3 | 4.93E-7 | 0.01 | -183022 | gtex_brain_putamen_basal |
| rs66999208 | 6 | 32526891 | HLA-DQA2 | ENSG00000237541.3 | 7.489E-7 | 0.01 | -182228 | gtex_brain_putamen_basal |
| rs67565142 | 6 | 32526893 | HLA-DQA2 | ENSG00000237541.3 | 6.358E-7 | 0.01 | -182226 | gtex_brain_putamen_basal |
| rs150192894 | 6 | 32540321 | HLA-DQA2 | ENSG00000237541.3 | 5.836E-7 | 0.01 | -168798 | gtex_brain_putamen_basal |
| rs183897916 | 6 | 32541278 | HLA-DQA2 | ENSG00000237541.3 | 3.302E-7 | 0.01 | -167841 | gtex_brain_putamen_basal |
| rs114371392 | 6 | 32541905 | HLA-DQA2 | ENSG00000237541.3 | 5.465E-7 | 0.01 | -167214 | gtex_brain_putamen_basal |
| rs35940886 | 6 | 32545969 | HLA-DQA2 | ENSG00000237541.3 | 5.235E-7 | 0.01 | -163150 | gtex_brain_putamen_basal |
| rs3201080 | 6 | 32546635 | HLA-DQA2 | ENSG00000237541.3 | 2.522E-7 | 0.01 | -162484 | gtex_brain_putamen_basal |
| rs34955866 | 6 | 32546863 | HLA-DQA2 | ENSG00000237541.3 | 8.46E-7 | 0.01 | -162256 | gtex_brain_putamen_basal |
| rs35445101 | 6 | 32546879 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -162240 | gtex_brain_putamen_basal |
| rs28724021 | 6 | 32550695 | HLA-DQA2 | ENSG00000237541.3 | 9.692E-7 | 0.01 | -158424 | gtex_brain_putamen_basal |
| rs9269931 | 6 | 32551708 | HLA-DQA2 | ENSG00000237541.3 | 8.379E-7 | 0.01 | -157411 | gtex_brain_putamen_basal |
| rs149614319 | 6 | 32552223 | HLA-DQA2 | ENSG00000237541.3 | 2.192E-7 | 0.01 | -156896 | gtex_brain_putamen_basal |
| rs144353907 | 6 | 32552226 | HLA-DQA2 | ENSG00000237541.3 | 2.192E-7 | 0.01 | -156893 | gtex_brain_putamen_basal |
| rs115462544 | 6 | 32552229 | HLA-DQA2 | ENSG00000237541.3 | 7.119E-8 | 0.01 | -156890 | gtex_brain_putamen_basal |
| rs34043063 | 6 | 32552816 | HLA-DQA2 | ENSG00000237541.3 | 2.076E-7 | 0.01 | -156303 | gtex_brain_putamen_basal |
| rs113823631 | 6 | 32553037 | HLA-DQA2 | ENSG00000237541.3 | 8.95E-8 | 0.01 | -156082 | gtex_brain_putamen_basal |
| rs200121167 | 6 | 32554724 | HLA-DQA2 | ENSG00000237541.3 | 3.337E-7 | 0.01 | -154395 | gtex_brain_putamen_basal |
| rs183652197 | 6 | 32558706 | HLA-DQA2 | ENSG00000237541.3 | 2.172E-8 | 0.01 | -150413 | gtex_brain_putamen_basal |
| rs77122291 | 6 | 32559019 | HLA-DQA2 | ENSG00000237541.3 | 6.614E-7 | 0.01 | -150100 | gtex_brain_putamen_basal |
| rs34788621 | 6 | 32559124 | HLA-DQA2 | ENSG00000237541.3 | 4.259E-7 | 0.01 | -149995 | gtex_brain_putamen_basal |
| rs34127991 | 6 | 32559131 | HLA-DQA2 | ENSG00000237541.3 | 2.563E-7 | 0.01 | -149988 | gtex_brain_putamen_basal |
| rs75928817 | 6 | 32559212 | HLA-DQA2 | ENSG00000237541.3 | 6.188E-7 | 0.01 | -149907 | gtex_brain_putamen_basal |
| rs28366254 | 6 | 32559481 | HLA-DQA2 | ENSG00000237541.3 | 2.605E-7 | 0.01 | -149638 | gtex_brain_putamen_basal |
| rs28366255 | 6 | 32559482 | HLA-DQA2 | ENSG00000237541.3 | 2.597E-7 | 0.01 | -149637 | gtex_brain_putamen_basal |
| rs28357084 | 6 | 32559483 | HLA-DQA2 | ENSG00000237541.3 | 2.605E-7 | 0.01 | -149636 | gtex_brain_putamen_basal |
| rs28366256 | 6 | 32559499 | HLA-DQA2 | ENSG00000237541.3 | 3.872E-7 | 0.01 | -149620 | gtex_brain_putamen_basal |
| rs28366267 | 6 | 32559781 | HLA-DQA2 | ENSG00000237541.3 | 7.737E-7 | 0.01 | -149338 | gtex_brain_putamen_basal |
| rs28366270 | 6 | 32559934 | HLA-DQA2 | ENSG00000237541.3 | 7.816E-7 | 0.01 | -149185 | gtex_brain_putamen_basal |
| rs28366283 | 6 | 32560288 | HLA-DQA2 | ENSG00000237541.3 | 4.273E-7 | 0.01 | -148831 | gtex_brain_putamen_basal |
| rs28366288 | 6 | 32560432 | HLA-DQA2 | ENSG00000237541.3 | 6.312E-7 | 0.01 | -148687 | gtex_brain_putamen_basal |
| rs28366294 | 6 | 32560715 | HLA-DQA2 | ENSG00000237541.3 | 9.502E-7 | 0.01 | -148404 | gtex_brain_putamen_basal |
| rs28366295 | 6 | 32560716 | HLA-DQA2 | ENSG00000237541.3 | 9.513E-7 | 0.01 | -148403 | gtex_brain_putamen_basal |
| rs28366296 | 6 | 32560727 | HLA-DQA2 | ENSG00000237541.3 | 7.321E-7 | 0.01 | -148392 | gtex_brain_putamen_basal |
| rs28366297 | 6 | 32560829 | HLA-DQA2 | ENSG00000237541.3 | 7.332E-7 | 0.01 | -148290 | gtex_brain_putamen_basal |
| rs28366298 | 6 | 32560859 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -148260 | gtex_brain_putamen_basal |
| rs28366299 | 6 | 32560870 | HLA-DQA2 | ENSG00000237541.3 | 9.529E-7 | 0.01 | -148249 | gtex_brain_putamen_basal |
| rs28366300 | 6 | 32560875 | HLA-DQA2 | ENSG00000237541.3 | 9.548E-7 | 0.01 | -148244 | gtex_brain_putamen_basal |
| rs28366301 | 6 | 32560883 | HLA-DQA2 | ENSG00000237541.3 | 7.273E-7 | 0.01 | -148236 | gtex_brain_putamen_basal |
| rs28366302 | 6 | 32560934 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -148185 | gtex_brain_putamen_basal |
| rs28366303 | 6 | 32560963 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -148156 | gtex_brain_putamen_basal |
| rs28366310 | 6 | 32561128 | HLA-DQA2 | ENSG00000237541.3 | 7.343E-7 | 0.01 | -147991 | gtex_brain_putamen_basal |
| rs28366312 | 6 | 32561175 | HLA-DQA2 | ENSG00000237541.3 | 7.322E-7 | 0.01 | -147944 | gtex_brain_putamen_basal |
| rs28366313 | 6 | 32561186 | HLA-DQA2 | ENSG00000237541.3 | 7.313E-7 | 0.01 | -147933 | gtex_brain_putamen_basal |
| rs28366314 | 6 | 32561201 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -147918 | gtex_brain_putamen_basal |
| rs28366315 | 6 | 32561207 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -147912 | gtex_brain_putamen_basal |
| rs28366316 | 6 | 32561246 | HLA-DQA2 | ENSG00000237541.3 | 7.522E-7 | 0.01 | -147873 | gtex_brain_putamen_basal |
| rs28366317 | 6 | 32561411 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -147708 | gtex_brain_putamen_basal |
| rs28366319 | 6 | 32561495 | HLA-DQA2 | ENSG00000237541.3 | 7.335E-7 | 0.01 | -147624 | gtex_brain_putamen_basal |
| rs28366323 | 6 | 32561609 | HLA-DQA2 | ENSG00000237541.3 | 9.589E-7 | 0.01 | -147510 | gtex_brain_putamen_basal |
| rs28366325 | 6 | 32561659 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -147460 | gtex_brain_putamen_basal |
| rs28366327 | 6 | 32561678 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -147441 | gtex_brain_putamen_basal |
| rs28366328 | 6 | 32561766 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -147353 | gtex_brain_putamen_basal |
| rs28366330 | 6 | 32561846 | HLA-DQA2 | ENSG00000237541.3 | 7.335E-7 | 0.01 | -147273 | gtex_brain_putamen_basal |
| rs28366334 | 6 | 32561895 | HLA-DQA2 | ENSG00000237541.3 | 7.335E-7 | 0.01 | -147224 | gtex_brain_putamen_basal |
| rs28366335 | 6 | 32561911 | HLA-DQA2 | ENSG00000237541.3 | 7.335E-7 | 0.01 | -147208 | gtex_brain_putamen_basal |
| rs532953104 | 6 | 32561956 | HLA-DQA2 | ENSG00000237541.3 | 7.327E-7 | 0.01 | -147163 | gtex_brain_putamen_basal |
| rs9271398 | 6 | 32587508 | HLA-DQA2 | ENSG00000237541.3 | 4.855E-7 | 0.01 | -121611 | gtex_brain_putamen_basal |
| rs9271408 | 6 | 32587613 | HLA-DQA2 | ENSG00000237541.3 | 3.291E-7 | 0.01 | -121506 | gtex_brain_putamen_basal |
| rs9271409 | 6 | 32587628 | HLA-DQA2 | ENSG00000237541.3 | 3.291E-7 | 0.01 | -121491 | gtex_brain_putamen_basal |
| rs9271411 | 6 | 32587661 | HLA-DQA2 | ENSG00000237541.3 | 3.285E-7 | 0.01 | -121458 | gtex_brain_putamen_basal |
| rs9271416 | 6 | 32587812 | HLA-DQA2 | ENSG00000237541.3 | 3.289E-7 | 0.01 | -121307 | gtex_brain_putamen_basal |
| rs9271426 | 6 | 32587973 | HLA-DQA2 | ENSG00000237541.3 | 3.289E-7 | 0.01 | -121146 | gtex_brain_putamen_basal |
| rs9271430 | 6 | 32588002 | HLA-DQA2 | ENSG00000237541.3 | 3.289E-7 | 0.01 | -121117 | gtex_brain_putamen_basal |
| rs9271438 | 6 | 32588193 | HLA-DQA2 | ENSG00000237541.3 | 3.285E-7 | 0.01 | -120926 | gtex_brain_putamen_basal |
| rs200512969 | 6 | 32588369 | HLA-DQA2 | ENSG00000237541.3 | 4.001E-7 | 0.01 | -120750 | gtex_brain_putamen_basal |
| rs9271464 | 6 | 32588544 | HLA-DQA2 | ENSG00000237541.3 | 3.29E-7 | 0.01 | -120575 | gtex_brain_putamen_basal |
| rs9271465 | 6 | 32588554 | HLA-DQA2 | ENSG00000237541.3 | 3.548E-7 | 0.01 | -120565 | gtex_brain_putamen_basal |
| rs9271469 | 6 | 32588630 | HLA-DQA2 | ENSG00000237541.3 | 3.318E-7 | 0.01 | -120489 | gtex_brain_putamen_basal |
| rs9271470 | 6 | 32588662 | HLA-DQA2 | ENSG00000237541.3 | 3.318E-7 | 0.01 | -120457 | gtex_brain_putamen_basal |
| rs9271472 | 6 | 32588700 | HLA-DQA2 | ENSG00000237541.3 | 3.318E-7 | 0.01 | -120419 | gtex_brain_putamen_basal |
| rs9271474 | 6 | 32588707 | HLA-DQA2 | ENSG00000237541.3 | 3.318E-7 | 0.01 | -120412 | gtex_brain_putamen_basal |
| rs9271480 | 6 | 32588831 | HLA-DQA2 | ENSG00000237541.3 | 4.315E-7 | 0.01 | -120288 | gtex_brain_putamen_basal |
| rs9271485 | 6 | 32588953 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -120166 | gtex_brain_putamen_basal |
| rs145443211 | 6 | 32588970 | HLA-DQA2 | ENSG00000237541.3 | 4.285E-7 | 0.01 | -120149 | gtex_brain_putamen_basal |
| rs9271486 | 6 | 32588980 | HLA-DQA2 | ENSG00000237541.3 | 4.281E-7 | 0.01 | -120139 | gtex_brain_putamen_basal |
| rs200688486 | 6 | 32589000 | HLA-DQA2 | ENSG00000237541.3 | 3.325E-7 | 0.01 | -120119 | gtex_brain_putamen_basal |
| rs9271498 | 6 | 32589282 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -119837 | gtex_brain_putamen_basal |
| rs9271503 | 6 | 32589326 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -119793 | gtex_brain_putamen_basal |
| rs9271511 | 6 | 32589483 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -119636 | gtex_brain_putamen_basal |
| rs9271521 | 6 | 32589783 | HLA-DQA2 | ENSG00000237541.3 | 3.293E-7 | 0.01 | -119336 | gtex_brain_putamen_basal |
| rs9271523 | 6 | 32589806 | HLA-DQA2 | ENSG00000237541.3 | 3.293E-7 | 0.01 | -119313 | gtex_brain_putamen_basal |
| rs142266382 | 6 | 32590087 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -119032 | gtex_brain_putamen_basal |
| rs9271544 | 6 | 32590120 | HLA-DQA2 | ENSG00000237541.3 | 3.318E-7 | 0.01 | -118999 | gtex_brain_putamen_basal |
| rs9271549 | 6 | 32590248 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -118871 | gtex_brain_putamen_basal |
| rs9271560 | 6 | 32590381 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -118738 | gtex_brain_putamen_basal |
| rs9271561 | 6 | 32590393 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -118726 | gtex_brain_putamen_basal |
| rs9271563 | 6 | 32590428 | HLA-DQA2 | ENSG00000237541.3 | 3.275E-7 | 0.01 | -118691 | gtex_brain_putamen_basal |
| rs9271564 | 6 | 32590436 | HLA-DQA2 | ENSG00000237541.3 | 3.32E-7 | 0.01 | -118683 | gtex_brain_putamen_basal |
| rs9271565 | 6 | 32590437 | HLA-DQA2 | ENSG00000237541.3 | 3.32E-7 | 0.01 | -118682 | gtex_brain_putamen_basal |
| rs9271574 | 6 | 32590590 | HLA-DQA2 | ENSG00000237541.3 | 3.318E-7 | 0.01 | -118529 | gtex_brain_putamen_basal |
| rs9271576 | 6 | 32590612 | HLA-DQA2 | ENSG00000237541.3 | 3.318E-7 | 0.01 | -118507 | gtex_brain_putamen_basal |
| rs9271584 | 6 | 32590870 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -118249 | gtex_brain_putamen_basal |
| rs9271585 | 6 | 32590879 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -118240 | gtex_brain_putamen_basal |
| rs9271589 | 6 | 32591128 | HLA-DQA2 | ENSG00000237541.3 | 4.954E-7 | 0.01 | -117991 | gtex_brain_putamen_basal |
| rs9271592 | 6 | 32591173 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -117946 | gtex_brain_putamen_basal |
| rs9271596 | 6 | 32591237 | HLA-DQA2 | ENSG00000237541.3 | 3.271E-7 | 0.01 | -117882 | gtex_brain_putamen_basal |
| rs9271605 | 6 | 32591448 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -117671 | gtex_brain_putamen_basal |
| rs9271607 | 6 | 32591566 | HLA-DQA2 | ENSG00000237541.3 | 3.279E-7 | 0.01 | -117553 | gtex_brain_putamen_basal |
| rs9271624 | 6 | 32591921 | HLA-DQA2 | ENSG00000237541.3 | 3.233E-7 | 0.01 | -117198 | gtex_brain_putamen_basal |
| rs9271628 | 6 | 32591971 | HLA-DQA2 | ENSG00000237541.3 | 3.243E-7 | 0.01 | -117148 | gtex_brain_putamen_basal |
| rs66735039 | 6 | 32592027 | HLA-DQA2 | ENSG00000237541.3 | 3.248E-7 | 0.01 | -117092 | gtex_brain_putamen_basal |
| rs9271637 | 6 | 32592124 | HLA-DQA2 | ENSG00000237541.3 | 3.216E-7 | 0.01 | -116995 | gtex_brain_putamen_basal |
| rs9271643 | 6 | 32592229 | HLA-DQA2 | ENSG00000237541.3 | 3.338E-7 | 0.01 | -116890 | gtex_brain_putamen_basal |
| rs9271644 | 6 | 32592337 | HLA-DQA2 | ENSG00000237541.3 | 3.293E-7 | 0.01 | -116782 | gtex_brain_putamen_basal |
| rs9271660 | 6 | 32592602 | HLA-DQA2 | ENSG00000237541.3 | 3.269E-7 | 0.01 | -116517 | gtex_brain_putamen_basal |
| rs9271661 | 6 | 32592605 | HLA-DQA2 | ENSG00000237541.3 | 3.269E-7 | 0.01 | -116514 | gtex_brain_putamen_basal |
| rs9271674 | 6 | 32592845 | HLA-DQA2 | ENSG00000237541.3 | 3.287E-7 | 0.01 | -116274 | gtex_brain_putamen_basal |
| rs9271675 | 6 | 32592862 | HLA-DQA2 | ENSG00000237541.3 | 3.287E-7 | 0.01 | -116257 | gtex_brain_putamen_basal |
| rs9271676 | 6 | 32592868 | HLA-DQA2 | ENSG00000237541.3 | 3.287E-7 | 0.01 | -116251 | gtex_brain_putamen_basal |
| rs9271685 | 6 | 32592970 | HLA-DQA2 | ENSG00000237541.3 | 3.35E-7 | 0.01 | -116149 | gtex_brain_putamen_basal |
| rs9271693 | 6 | 32593033 | HLA-DQA2 | ENSG00000237541.3 | 3.295E-7 | 0.01 | -116086 | gtex_brain_putamen_basal |
| rs9271722 | 6 | 32593522 | HLA-DQA2 | ENSG00000237541.3 | 3.306E-7 | 0.01 | -115597 | gtex_brain_putamen_basal |
| rs9271734 | 6 | 32593639 | HLA-DQA2 | ENSG00000237541.3 | 3.371E-7 | 0.01 | -115480 | gtex_brain_putamen_basal |
| rs9271735 | 6 | 32593649 | HLA-DQA2 | ENSG00000237541.3 | 3.371E-7 | 0.01 | -115470 | gtex_brain_putamen_basal |
| rs9271736 | 6 | 32593688 | HLA-DQA2 | ENSG00000237541.3 | 3.367E-7 | 0.01 | -115431 | gtex_brain_putamen_basal |
| rs9271755 | 6 | 32593926 | HLA-DQA2 | ENSG00000237541.3 | 5.51E-7 | 0.01 | -115193 | gtex_brain_putamen_basal |
| rs9271758 | 6 | 32593997 | HLA-DQA2 | ENSG00000237541.3 | 6.318E-7 | 0.01 | -115122 | gtex_brain_putamen_basal |
| rs9271759 | 6 | 32594006 | HLA-DQA2 | ENSG00000237541.3 | 5.3E-7 | 0.01 | -115113 | gtex_brain_putamen_basal |
| rs9271760 | 6 | 32594012 | HLA-DQA2 | ENSG00000237541.3 | 5.81E-7 | 0.01 | -115107 | gtex_brain_putamen_basal |
| rs9271761 | 6 | 32594022 | HLA-DQA2 | ENSG00000237541.3 | 6.234E-7 | 0.01 | -115097 | gtex_brain_putamen_basal |
| rs9271762 | 6 | 32594028 | HLA-DQA2 | ENSG00000237541.3 | 3.26E-7 | 0.01 | -115091 | gtex_brain_putamen_basal |
| rs9271769 | 6 | 32594217 | HLA-DQA2 | ENSG00000237541.3 | 3.312E-7 | 0.01 | -114902 | gtex_brain_putamen_basal |
| rs9271776 | 6 | 32594341 | HLA-DQA2 | ENSG00000237541.3 | 3.348E-7 | 0.01 | -114778 | gtex_brain_putamen_basal |
| rs3104393 | 6 | 32594403 | HLA-DQA2 | ENSG00000237541.3 | 3.338E-7 | 0.01 | -114716 | gtex_brain_putamen_basal |
| rs547619464 | 6 | 32594660 | HLA-DQA2 | ENSG00000237541.3 | 3.379E-7 | 0.01 | -114459 | gtex_brain_putamen_basal |
| rs3104389 | 6 | 32595097 | HLA-DQA2 | ENSG00000237541.3 | 3.322E-7 | 0.01 | -114022 | gtex_brain_putamen_basal |
| rs9271853 | 6 | 32595117 | HLA-DQA2 | ENSG00000237541.3 | 3.429E-7 | 0.01 | -114002 | gtex_brain_putamen_basal |
| rs2133035 | 6 | 32596475 | HLA-DQA2 | ENSG00000237541.3 | 3.359E-7 | 0.01 | -112644 | gtex_brain_putamen_basal |
| rs557667558 | 6 | 32596838 | HLA-DQA2 | ENSG00000237541.3 | 3.24E-7 | 0.01 | -112281 | gtex_brain_putamen_basal |
| rs9272025 | 6 | 32598581 | HLA-DQA2 | ENSG00000237541.3 | 3.469E-7 | 0.01 | -110538 | gtex_brain_putamen_basal |
| rs1826961 | 6 | 32603866 | HLA-DQA2 | ENSG00000237541.3 | 2.109E-7 | 0.01 | -105253 | gtex_brain_putamen_basal |
| rs9281995 | 6 | 32604008 | HLA-DQA2 | ENSG00000237541.3 | 1.394E-7 | 0.01 | -105111 | gtex_brain_putamen_basal |
| rs9272319 | 6 | 32604108 | HLA-DQA2 | ENSG00000237541.3 | 2.089E-7 | 0.01 | -105011 | gtex_brain_putamen_basal |
| rs9272323 | 6 | 32604151 | HLA-DQA2 | ENSG00000237541.3 | 2.086E-7 | 0.01 | -104968 | gtex_brain_putamen_basal |
| rs9272335 | 6 | 32604259 | HLA-DQA2 | ENSG00000237541.3 | 2.081E-7 | 0.01 | -104860 | gtex_brain_putamen_basal |
| rs9272347 | 6 | 32604394 | HLA-DQA2 | ENSG00000237541.3 | 1.727E-7 | 0.01 | -104725 | gtex_brain_putamen_basal |
| rs9272358 | 6 | 32604538 | HLA-DQA2 | ENSG00000237541.3 | 6.956E-8 | 0.01 | -104581 | gtex_brain_putamen_basal |
| rs9272362 | 6 | 32604564 | HLA-DQA2 | ENSG00000237541.3 | 6.943E-8 | 0.01 | -104555 | gtex_brain_putamen_basal |
| rs9272365 | 6 | 32604621 | HLA-DQA2 | ENSG00000237541.3 | 2.584E-8 | 0.01 | -104498 | gtex_brain_putamen_basal |
| rs9272366 | 6 | 32604622 | HLA-DQA2 | ENSG00000237541.3 | 6.216E-8 | 0.01 | -104497 | gtex_brain_putamen_basal |
| rs145314664 | 6 | 32604870 | HLA-DQA2 | ENSG00000237541.3 | 2.585E-7 | 0.01 | -104249 | gtex_brain_putamen_basal |
| rs9272407 | 6 | 32604931 | HLA-DQA2 | ENSG00000237541.3 | 3.226E-7 | 0.01 | -104188 | gtex_brain_putamen_basal |
| rs9272412 | 6 | 32604982 | HLA-DQA2 | ENSG00000237541.3 | 5.415E-7 | 0.01 | -104137 | gtex_brain_putamen_basal |
| rs9272420 | 6 | 32605101 | HLA-DQA2 | ENSG00000237541.3 | 3.341E-7 | 0.01 | -104018 | gtex_brain_putamen_basal |
| rs1129735 | 6 | 32605295 | HLA-DQA2 | ENSG00000237541.3 | 7.987E-8 | 0.01 | -103824 | gtex_brain_putamen_basal |
| rs9272435 | 6 | 32605336 | HLA-DQA2 | ENSG00000237541.3 | 3.393E-7 | 0.01 | -103783 | gtex_brain_putamen_basal |
| rs9272443 | 6 | 32605418 | HLA-DQA2 | ENSG00000237541.3 | 2.638E-7 | 0.01 | -103701 | gtex_brain_putamen_basal |
| rs9272444 | 6 | 32605419 | HLA-DQA2 | ENSG00000237541.3 | 2.638E-7 | 0.01 | -103700 | gtex_brain_putamen_basal |
| rs9272463 | 6 | 32605646 | HLA-DQA2 | ENSG00000237541.3 | 2.188E-7 | 0.01 | -103473 | gtex_brain_putamen_basal |
| rs9272472 | 6 | 32605724 | HLA-DQA2 | ENSG00000237541.3 | 2.179E-7 | 0.01 | -103395 | gtex_brain_putamen_basal |
| rs9272485 | 6 | 32605972 | HLA-DQA2 | ENSG00000237541.3 | 2.124E-7 | 0.01 | -103147 | gtex_brain_putamen_basal |
| rs9272486 | 6 | 32605982 | HLA-DQA2 | ENSG00000237541.3 | 2.124E-7 | 0.01 | -103137 | gtex_brain_putamen_basal |
| rs9272492 | 6 | 32606052 | HLA-DQA2 | ENSG00000237541.3 | 2.043E-7 | 0.01 | -103067 | gtex_brain_putamen_basal |
| rs9272498 | 6 | 32606217 | HLA-DQA2 | ENSG00000237541.3 | 2.253E-7 | 0.01 | -102902 | gtex_brain_putamen_basal |
| rs9272510 | 6 | 32606367 | HLA-DQA2 | ENSG00000237541.3 | 2.195E-7 | 0.01 | -102752 | gtex_brain_putamen_basal |
| rs9272514 | 6 | 32606385 | HLA-DQA2 | ENSG00000237541.3 | 2.176E-7 | 0.01 | -102734 | gtex_brain_putamen_basal |
| rs28383357 | 6 | 32606732 | HLA-DQA2 | ENSG00000237541.3 | 2.186E-7 | 0.01 | -102387 | gtex_brain_putamen_basal |
| rs28383359 | 6 | 32606794 | HLA-DQA2 | ENSG00000237541.3 | 7.076E-7 | 0.01 | -102325 | gtex_brain_putamen_basal |
| rs28383361 | 6 | 32606846 | HLA-DQA2 | ENSG00000237541.3 | 1.379E-7 | 0.01 | -102273 | gtex_brain_putamen_basal |
| rs28383362 | 6 | 32606864 | HLA-DQA2 | ENSG00000237541.3 | 2.174E-7 | 0.01 | -102255 | gtex_brain_putamen_basal |
| rs28383363 | 6 | 32606868 | HLA-DQA2 | ENSG00000237541.3 | 2.174E-7 | 0.01 | -102251 | gtex_brain_putamen_basal |
| rs28383365 | 6 | 32606942 | HLA-DQA2 | ENSG00000237541.3 | 2.393E-7 | 0.01 | -102177 | gtex_brain_putamen_basal |
| rs28383367 | 6 | 32607031 | HLA-DQA2 | ENSG00000237541.3 | 3.754E-7 | 0.01 | -102088 | gtex_brain_putamen_basal |
| rs28383372 | 6 | 32607174 | HLA-DQA2 | ENSG00000237541.3 | 5.173E-7 | 0.01 | -101945 | gtex_brain_putamen_basal |
| rs28383373 | 6 | 32607193 | HLA-DQA2 | ENSG00000237541.3 | 5.141E-7 | 0.01 | -101926 | gtex_brain_putamen_basal |
| . | 6 | 32607197 | HLA-DQA2 | ENSG00000237541.3 | 6.892E-7 | 0.01 | -101922 | gtex_brain_putamen_basal |
| rs28383375 | 6 | 32607203 | HLA-DQA2 | ENSG00000237541.3 | 6.845E-7 | 0.01 | -101916 | gtex_brain_putamen_basal |
| rs28383377 | 6 | 32607227 | HLA-DQA2 | ENSG00000237541.3 | 5.55E-7 | 0.01 | -101892 | gtex_brain_putamen_basal |
| rs28383379 | 6 | 32607242 | HLA-DQA2 | ENSG00000237541.3 | 2.186E-7 | 0.01 | -101877 | gtex_brain_putamen_basal |
| rs28383383 | 6 | 32607368 | HLA-DQA2 | ENSG00000237541.3 | 3.973E-7 | 0.01 | -101751 | gtex_brain_putamen_basal |
| rs28383384 | 6 | 32607414 | HLA-DQA2 | ENSG00000237541.3 | 4.374E-7 | 0.01 | -101705 | gtex_brain_putamen_basal |
| rs28383385 | 6 | 32607416 | HLA-DQA2 | ENSG00000237541.3 | 4.374E-7 | 0.01 | -101703 | gtex_brain_putamen_basal |
| rs148182436 | 6 | 32607441 | HLA-DQA2 | ENSG00000237541.3 | 4.091E-7 | 0.01 | -101678 | gtex_brain_putamen_basal |
| rs28383389 | 6 | 32607596 | HLA-DQA2 | ENSG00000237541.3 | 2.145E-7 | 0.01 | -101523 | gtex_brain_putamen_basal |
| rs28383391 | 6 | 32607659 | HLA-DQA2 | ENSG00000237541.3 | 2.22E-7 | 0.01 | -101460 | gtex_brain_putamen_basal |
| rs28383392 | 6 | 32607660 | HLA-DQA2 | ENSG00000237541.3 | 2.22E-7 | 0.01 | -101459 | gtex_brain_putamen_basal |
| rs374402734 | 6 | 32607898 | HLA-DQA2 | ENSG00000237541.3 | 2.129E-7 | 0.01 | -101221 | gtex_brain_putamen_basal |
| rs28383400 | 6 | 32607950 | HLA-DQA2 | ENSG00000237541.3 | 8.782E-8 | 0.01 | -101169 | gtex_brain_putamen_basal |
| rs28383401 | 6 | 32607973 | HLA-DQA2 | ENSG00000237541.3 | 2.264E-7 | 0.01 | -101146 | gtex_brain_putamen_basal |
| rs28383403 | 6 | 32608035 | HLA-DQA2 | ENSG00000237541.3 | 2.126E-7 | 0.01 | -101084 | gtex_brain_putamen_basal |
| rs28383405 | 6 | 32608108 | HLA-DQA2 | ENSG00000237541.3 | 2.124E-7 | 0.01 | -101011 | gtex_brain_putamen_basal |
| rs201409109 | 6 | 32608177 | HLA-DQA2 | ENSG00000237541.3 | 7.318E-7 | 0.01 | -100942 | gtex_brain_putamen_basal |
| rs28383408 | 6 | 32608251 | HLA-DQA2 | ENSG00000237541.3 | 2.12E-7 | 0.01 | -100868 | gtex_brain_putamen_basal |
| rs28383411 | 6 | 32608308 | HLA-DQA2 | ENSG00000237541.3 | 2.277E-7 | 0.01 | -100811 | gtex_brain_putamen_basal |
| rs397709393 | 6 | 32608392 | HLA-DQA2 | ENSG00000237541.3 | 2.092E-7 | 0.01 | -100727 | gtex_brain_putamen_basal |
| rs201457699 | 6 | 32608394 | HLA-DQA2 | ENSG00000237541.3 | 7.328E-7 | 0.01 | -100725 | gtex_brain_putamen_basal |
| rs28383413 | 6 | 32608417 | HLA-DQA2 | ENSG00000237541.3 | 2.099E-7 | 0.01 | -100702 | gtex_brain_putamen_basal |
| rs28383415 | 6 | 32608473 | HLA-DQA2 | ENSG00000237541.3 | 2.311E-7 | 0.01 | -100646 | gtex_brain_putamen_basal |
| rs28383416 | 6 | 32608483 | HLA-DQA2 | ENSG00000237541.3 | 2.311E-7 | 0.01 | -100636 | gtex_brain_putamen_basal |
| rs28383418 | 6 | 32608537 | HLA-DQA2 | ENSG00000237541.3 | 2.768E-7 | 0.01 | -100582 | gtex_brain_putamen_basal |
| rs28383419 | 6 | 32608622 | HLA-DQA2 | ENSG00000237541.3 | 2.771E-7 | 0.01 | -100497 | gtex_brain_putamen_basal |
| rs28383427 | 6 | 32608792 | HLA-DQA2 | ENSG00000237541.3 | 2.172E-7 | 0.01 | -100327 | gtex_brain_putamen_basal |
| rs28383428 | 6 | 32608809 | HLA-DQA2 | ENSG00000237541.3 | 2.174E-7 | 0.01 | -100310 | gtex_brain_putamen_basal |
| rs28383429 | 6 | 32608844 | HLA-DQA2 | ENSG00000237541.3 | 2.269E-7 | 0.01 | -100275 | gtex_brain_putamen_basal |
| rs28383431 | 6 | 32608856 | HLA-DQA2 | ENSG00000237541.3 | 2.247E-7 | 0.01 | -100263 | gtex_brain_putamen_basal |
| rs28383432 | 6 | 32608880 | HLA-DQA2 | ENSG00000237541.3 | 1.237E-7 | 0.01 | -100239 | gtex_brain_putamen_basal |
| rs67715515 | 6 | 32608982 | HLA-DQA2 | ENSG00000237541.3 | 2.311E-7 | 0.01 | -100137 | gtex_brain_putamen_basal |
| rs28383439 | 6 | 32609042 | HLA-DQA2 | ENSG00000237541.3 | 2.266E-7 | 0.01 | -100077 | gtex_brain_putamen_basal |
| rs28383441 | 6 | 32609056 | HLA-DQA2 | ENSG00000237541.3 | 2.371E-7 | 0.01 | -100063 | gtex_brain_putamen_basal |
| rs1048027 | 6 | 32609169 | HLA-DQA2 | ENSG00000237541.3 | 1.048E-7 | 0.01 | -99950 | gtex_brain_putamen_basal |
| rs1129765 | 6 | 32609181 | HLA-DQA2 | ENSG00000237541.3 | 1.876E-7 | 0.01 | -99938 | gtex_brain_putamen_basal |
| rs28383453 | 6 | 32609358 | HLA-DQA2 | ENSG00000237541.3 | 2.359E-7 | 0.01 | -99761 | gtex_brain_putamen_basal |
| rs28383456 | 6 | 32609453 | HLA-DQA2 | ENSG00000237541.3 | 1.284E-7 | 0.01 | -99666 | gtex_brain_putamen_basal |
| rs28383457 | 6 | 32609456 | HLA-DQA2 | ENSG00000237541.3 | 2.331E-7 | 0.01 | -99663 | gtex_brain_putamen_basal |
| rs35874654 | 6 | 32609479 | HLA-DQA2 | ENSG00000237541.3 | 7.133E-7 | 0.01 | -99640 | gtex_brain_putamen_basal |
| rs34965214 | 6 | 32609545 | HLA-DQA2 | ENSG00000237541.3 | 7.075E-7 | 0.01 | -99574 | gtex_brain_putamen_basal |
| rs28383460 | 6 | 32609586 | HLA-DQA2 | ENSG00000237541.3 | 2.266E-7 | 0.01 | -99533 | gtex_brain_putamen_basal |
| rs9272736 | 6 | 32609671 | HLA-DQA2 | ENSG00000237541.3 | 2.034E-7 | 0.01 | -99448 | gtex_brain_putamen_basal |
| rs9272737 | 6 | 32609673 | HLA-DQA2 | ENSG00000237541.3 | 2.034E-7 | 0.01 | -99446 | gtex_brain_putamen_basal |
| rs9272742 | 6 | 32609722 | HLA-DQA2 | ENSG00000237541.3 | 7.113E-7 | 0.01 | -99397 | gtex_brain_putamen_basal |
| rs9272744 | 6 | 32609746 | HLA-DQA2 | ENSG00000237541.3 | 2.266E-7 | 0.01 | -99373 | gtex_brain_putamen_basal |
| rs1048173 | 6 | 32609855 | HLA-DQA2 | ENSG00000237541.3 | 2.181E-7 | 0.01 | -99264 | gtex_brain_putamen_basal |
| rs2308890 | 6 | 32610008 | HLA-DQA2 | ENSG00000237541.3 | 2.27E-7 | 0.01 | -99111 | gtex_brain_putamen_basal |
| rs552591293 | 6 | 32610099 | HLA-DQA2 | ENSG00000237541.3 | 2.266E-7 | 0.01 | -99020 | gtex_brain_putamen_basal |
| rs75076975 | 6 | 32610134 | HLA-DQA2 | ENSG00000237541.3 | 2.269E-7 | 0.01 | -98985 | gtex_brain_putamen_basal |
| rs79351547 | 6 | 32610196 | HLA-DQA2 | ENSG00000237541.3 | 2.673E-7 | 0.01 | -98923 | gtex_brain_putamen_basal |
| rs116022266 | 6 | 32610201 | HLA-DQA2 | ENSG00000237541.3 | 2.673E-7 | 0.01 | -98918 | gtex_brain_putamen_basal |
| rs75309743 | 6 | 32610228 | HLA-DQA2 | ENSG00000237541.3 | 1.009E-7 | 0.01 | -98891 | gtex_brain_putamen_basal |
| rs9272774 | 6 | 32610255 | HLA-DQA2 | ENSG00000237541.3 | 1.879E-7 | 0.01 | -98864 | gtex_brain_putamen_basal |
| rs9272785 | 6 | 32610401 | HLA-DQA2 | ENSG00000237541.3 | 7.095E-7 | 0.01 | -98718 | gtex_brain_putamen_basal |
| rs3188543 | 6 | 32610403 | HLA-DQA2 | ENSG00000237541.3 | 2.27E-7 | 0.01 | -98716 | gtex_brain_putamen_basal |
| rs1048414 | 6 | 32610478 | HLA-DQA2 | ENSG00000237541.3 | 3.423E-7 | 0.01 | -98641 | gtex_brain_putamen_basal |
| rs1048419 | 6 | 32610481 | HLA-DQA2 | ENSG00000237541.3 | 3.423E-7 | 0.01 | -98638 | gtex_brain_putamen_basal |
| rs3188642 | 6 | 32610553 | HLA-DQA2 | ENSG00000237541.3 | 3.667E-7 | 0.01 | -98566 | gtex_brain_putamen_basal |
| rs9272865 | 6 | 32610736 | HLA-DQA2 | ENSG00000237541.3 | 2.413E-7 | 0.01 | -98383 | gtex_brain_putamen_basal |
| rs201719977 | 6 | 32610848 | HLA-DQA2 | ENSG00000237541.3 | 3.691E-7 | 0.01 | -98271 | gtex_brain_putamen_basal |
| rs9272913 | 6 | 32610860 | HLA-DQA2 | ENSG00000237541.3 | 3.787E-7 | 0.01 | -98259 | gtex_brain_putamen_basal |
| rs9272914 | 6 | 32610863 | HLA-DQA2 | ENSG00000237541.3 | 3.787E-7 | 0.01 | -98256 | gtex_brain_putamen_basal |
| rs3667 | 6 | 32610934 | HLA-DQA2 | ENSG00000237541.3 | 3.611E-7 | 0.01 | -98185 | gtex_brain_putamen_basal |
| rs1130156 | 6 | 32610968 | HLA-DQA2 | ENSG00000237541.3 | 3.205E-7 | 0.01 | -98151 | gtex_brain_putamen_basal |
| rs1130161 | 6 | 32610994 | HLA-DQA2 | ENSG00000237541.3 | 3.274E-7 | 0.01 | -98125 | gtex_brain_putamen_basal |
| rs1064985 | 6 | 32611034 | HLA-DQA2 | ENSG00000237541.3 | 6.609E-7 | 0.01 | -98085 | gtex_brain_putamen_basal |
| rs707947 | 6 | 32611068 | HLA-DQA2 | ENSG00000237541.3 | 3.277E-7 | 0.01 | -98051 | gtex_brain_putamen_basal |
| rs9272940 | 6 | 32611081 | HLA-DQA2 | ENSG00000237541.3 | 3.286E-7 | 0.01 | -98038 | gtex_brain_putamen_basal |
| rs9272951 | 6 | 32611125 | HLA-DQA2 | ENSG00000237541.3 | 3.714E-7 | 0.01 | -97994 | gtex_brain_putamen_basal |
| rs9272952 | 6 | 32611127 | HLA-DQA2 | ENSG00000237541.3 | 3.723E-7 | 0.01 | -97992 | gtex_brain_putamen_basal |
| rs9272955 | 6 | 32611145 | HLA-DQA2 | ENSG00000237541.3 | 3.523E-7 | 0.01 | -97974 | gtex_brain_putamen_basal |
| rs9272957 | 6 | 32611152 | HLA-DQA2 | ENSG00000237541.3 | 3.523E-7 | 0.01 | -97967 | gtex_brain_putamen_basal |
| rs1064993 | 6 | 32611181 | HLA-DQA2 | ENSG00000237541.3 | 3.242E-7 | 0.01 | -97938 | gtex_brain_putamen_basal |
| rs1065043 | 6 | 32611234 | HLA-DQA2 | ENSG00000237541.3 | 3.537E-7 | 0.01 | -97885 | gtex_brain_putamen_basal |
| rs1065044 | 6 | 32611243 | HLA-DQA2 | ENSG00000237541.3 | 3.537E-7 | 0.01 | -97876 | gtex_brain_putamen_basal |
| rs1065047 | 6 | 32611260 | HLA-DQA2 | ENSG00000237541.3 | 3.581E-7 | 0.01 | -97859 | gtex_brain_putamen_basal |
| rs1065048 | 6 | 32611265 | HLA-DQA2 | ENSG00000237541.3 | 3.581E-7 | 0.01 | -97854 | gtex_brain_putamen_basal |
| rs9272970 | 6 | 32611301 | HLA-DQA2 | ENSG00000237541.3 | 3.666E-7 | 0.01 | -97818 | gtex_brain_putamen_basal |
| rs9272973 | 6 | 32611312 | HLA-DQA2 | ENSG00000237541.3 | 3.672E-7 | 0.01 | -97807 | gtex_brain_putamen_basal |
| rs9272980 | 6 | 32611357 | HLA-DQA2 | ENSG00000237541.3 | 2.339E-7 | 0.01 | -97762 | gtex_brain_putamen_basal |
| rs9272983 | 6 | 32611392 | HLA-DQA2 | ENSG00000237541.3 | 2.418E-7 | 0.01 | -97727 | gtex_brain_putamen_basal |
| rs9272984 | 6 | 32611393 | HLA-DQA2 | ENSG00000237541.3 | 2.412E-7 | 0.01 | -97726 | gtex_brain_putamen_basal |
| rs9272987 | 6 | 32611403 | HLA-DQA2 | ENSG00000237541.3 | 2.421E-7 | 0.01 | -97716 | gtex_brain_putamen_basal |
| rs9272989 | 6 | 32611418 | HLA-DQA2 | ENSG00000237541.3 | 2.388E-7 | 0.01 | -97701 | gtex_brain_putamen_basal |
| rs9272990 | 6 | 32611427 | HLA-DQA2 | ENSG00000237541.3 | 2.399E-7 | 0.01 | -97692 | gtex_brain_putamen_basal |
| rs9272995 | 6 | 32611466 | HLA-DQA2 | ENSG00000237541.3 | 3.319E-7 | 0.01 | -97653 | gtex_brain_putamen_basal |
| rs9272998 | 6 | 32611474 | HLA-DQA2 | ENSG00000237541.3 | 3.322E-7 | 0.01 | -97645 | gtex_brain_putamen_basal |
| rs9273002 | 6 | 32611513 | HLA-DQA2 | ENSG00000237541.3 | 3.311E-7 | 0.01 | -97606 | gtex_brain_putamen_basal |
| rs9273007 | 6 | 32611537 | HLA-DQA2 | ENSG00000237541.3 | 3.231E-7 | 0.01 | -97582 | gtex_brain_putamen_basal |
| rs9273008 | 6 | 32611572 | HLA-DQA2 | ENSG00000237541.3 | 3.127E-7 | 0.01 | -97547 | gtex_brain_putamen_basal |
| rs9273009 | 6 | 32611579 | HLA-DQA2 | ENSG00000237541.3 | 3.124E-7 | 0.01 | -97540 | gtex_brain_putamen_basal |
| rs9273014 | 6 | 32611650 | HLA-DQA2 | ENSG00000237541.3 | 3.127E-7 | 0.01 | -97469 | gtex_brain_putamen_basal |
| rs9273022 | 6 | 32611737 | HLA-DQA2 | ENSG00000237541.3 | 3.61E-7 | 0.01 | -97382 | gtex_brain_putamen_basal |
| rs9273031 | 6 | 32611849 | HLA-DQA2 | ENSG00000237541.3 | 3.338E-7 | 0.01 | -97270 | gtex_brain_putamen_basal |
| rs9273036 | 6 | 32611898 | HLA-DQA2 | ENSG00000237541.3 | 3.312E-7 | 0.01 | -97221 | gtex_brain_putamen_basal |
| rs9273040 | 6 | 32611958 | HLA-DQA2 | ENSG00000237541.3 | 3.273E-7 | 0.01 | -97161 | gtex_brain_putamen_basal |
| rs9273042 | 6 | 32611964 | HLA-DQA2 | ENSG00000237541.3 | 3.269E-7 | 0.01 | -97155 | gtex_brain_putamen_basal |
| rs9273044 | 6 | 32611971 | HLA-DQA2 | ENSG00000237541.3 | 3.268E-7 | 0.01 | -97148 | gtex_brain_putamen_basal |
| rs9273048 | 6 | 32612008 | HLA-DQA2 | ENSG00000237541.3 | 3.275E-7 | 0.01 | -97111 | gtex_brain_putamen_basal |
| rs9273062 | 6 | 32612161 | HLA-DQA2 | ENSG00000237541.3 | 3.459E-7 | 0.01 | -96958 | gtex_brain_putamen_basal |
| rs9273063 | 6 | 32612166 | HLA-DQA2 | ENSG00000237541.3 | 3.459E-7 | 0.01 | -96953 | gtex_brain_putamen_basal |
| rs9273070 | 6 | 32612241 | HLA-DQA2 | ENSG00000237541.3 | 3.64E-7 | 0.01 | -96878 | gtex_brain_putamen_basal |
| rs9273071 | 6 | 32612251 | HLA-DQA2 | ENSG00000237541.3 | 3.649E-7 | 0.01 | -96868 | gtex_brain_putamen_basal |
| rs9273073 | 6 | 32612279 | HLA-DQA2 | ENSG00000237541.3 | 3.697E-7 | 0.01 | -96840 | gtex_brain_putamen_basal |
| rs9273079 | 6 | 32612326 | HLA-DQA2 | ENSG00000237541.3 | 3.177E-7 | 0.01 | -96793 | gtex_brain_putamen_basal |
| rs9273093 | 6 | 32612514 | HLA-DQA2 | ENSG00000237541.3 | 3.585E-7 | 0.01 | -96605 | gtex_brain_putamen_basal |
| rs9273103 | 6 | 32612576 | HLA-DQA2 | ENSG00000237541.3 | 4.5E-7 | 0.01 | -96543 | gtex_brain_putamen_basal |
| rs9273104 | 6 | 32612595 | HLA-DQA2 | ENSG00000237541.3 | 4.499E-7 | 0.01 | -96524 | gtex_brain_putamen_basal |
| rs9273107 | 6 | 32612620 | HLA-DQA2 | ENSG00000237541.3 | 2.329E-7 | 0.01 | -96499 | gtex_brain_putamen_basal |
| rs9273108 | 6 | 32612626 | HLA-DQA2 | ENSG00000237541.3 | 2.327E-7 | 0.01 | -96493 | gtex_brain_putamen_basal |
| rs9273110 | 6 | 32612633 | HLA-DQA2 | ENSG00000237541.3 | 2.317E-7 | 0.01 | -96486 | gtex_brain_putamen_basal |
| rs9273111 | 6 | 32612643 | HLA-DQA2 | ENSG00000237541.3 | 9.992E-8 | 0.01 | -96476 | gtex_brain_putamen_basal |
| rs199556487 | 6 | 32612747 | HLA-DQA2 | ENSG00000237541.3 | 2.263E-7 | 0.01 | -96372 | gtex_brain_putamen_basal |
| rs9273138 | 6 | 32612843 | HLA-DQA2 | ENSG00000237541.3 | 5.211E-7 | 0.01 | -96276 | gtex_brain_putamen_basal |
| rs9273144 | 6 | 32612915 | HLA-DQA2 | ENSG00000237541.3 | 5.28E-7 | 0.01 | -96204 | gtex_brain_putamen_basal |
| rs200822213 | 6 | 32612978 | HLA-DQA2 | ENSG00000237541.3 | 1.349E-7 | 0.01 | -96141 | gtex_brain_putamen_basal |
| rs9273149 | 6 | 32612987 | HLA-DQA2 | ENSG00000237541.3 | 2.363E-7 | 0.01 | -96132 | gtex_brain_putamen_basal |
| rs9273154 | 6 | 32613028 | HLA-DQA2 | ENSG00000237541.3 | 5.209E-7 | 0.01 | -96091 | gtex_brain_putamen_basal |
| rs9273155 | 6 | 32613042 | HLA-DQA2 | ENSG00000237541.3 | 5.172E-7 | 0.01 | -96077 | gtex_brain_putamen_basal |
| rs9273157 | 6 | 32613052 | HLA-DQA2 | ENSG00000237541.3 | 5.241E-7 | 0.01 | -96067 | gtex_brain_putamen_basal |
| rs9273159 | 6 | 32613093 | HLA-DQA2 | ENSG00000237541.3 | 5.336E-7 | 0.01 | -96026 | gtex_brain_putamen_basal |
| rs9273169 | 6 | 32613174 | HLA-DQA2 | ENSG00000237541.3 | 8.101E-7 | 0.01 | -95945 | gtex_brain_putamen_basal |
| rs9273174 | 6 | 32613237 | HLA-DQA2 | ENSG00000237541.3 | 6.387E-7 | 0.01 | -95882 | gtex_brain_putamen_basal |
| rs9273180 | 6 | 32613306 | HLA-DQA2 | ENSG00000237541.3 | 3.177E-7 | 0.01 | -95813 | gtex_brain_putamen_basal |
| rs9273182 | 6 | 32613314 | HLA-DQA2 | ENSG00000237541.3 | 3.217E-7 | 0.01 | -95805 | gtex_brain_putamen_basal |
| rs9273187 | 6 | 32613376 | HLA-DQA2 | ENSG00000237541.3 | 4.079E-7 | 0.01 | -95743 | gtex_brain_putamen_basal |
| rs67297805 | 6 | 32613702 | HLA-DQA2 | ENSG00000237541.3 | 3.347E-7 | 0.01 | -95417 | gtex_brain_putamen_basal |
| rs186269395 | 6 | 32613885 | HLA-DQA2 | ENSG00000237541.3 | 3.343E-7 | 0.01 | -95234 | gtex_brain_putamen_basal |
| rs115210925 | 6 | 32614094 | HLA-DQA2 | ENSG00000237541.3 | 6.343E-7 | 0.01 | -95025 | gtex_brain_putamen_basal |
| rs114430970 | 6 | 32614158 | HLA-DQA2 | ENSG00000237541.3 | 5.755E-7 | 0.01 | -94961 | gtex_brain_putamen_basal |
| rs114700859 | 6 | 32614255 | HLA-DQA2 | ENSG00000237541.3 | 4.797E-7 | 0.01 | -94864 | gtex_brain_putamen_basal |
| rs115906938 | 6 | 32614623 | HLA-DQA2 | ENSG00000237541.3 | 9.459E-7 | 0.01 | -94496 | gtex_brain_putamen_basal |
| rs41269985 | 6 | 32621364 | HLA-DQA2 | ENSG00000237541.3 | 4.504E-7 | 0.01 | -87755 | gtex_brain_putamen_basal |
| rs17613340 | 6 | 32621966 | HLA-DQA2 | ENSG00000237541.3 | 9.289E-7 | 0.01 | -87153 | gtex_brain_putamen_basal |
| . | 6 | 32631142 | HLA-DQA2 | ENSG00000237541.3 | 7.615E-7 | 0.01 | -77977 | gtex_brain_putamen_basal |
| rs28746784 | 6 | 32632261 | HLA-DQA2 | ENSG00000237541.3 | 4.575E-7 | 0.01 | -76858 | gtex_brain_putamen_basal |
Section II. Transcriptome annotation
General gene expression (GTEx)
Gene expression during devlopment (BrainCloud)
Footnote:
A total of 269 time points ploted, with n=38 fetal samples (x=1:38). Each triangle represents one time point.
Gene expression of temporal and spatial changes (BrainSpan)
Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes the lower 25% and upper 25% of the expression distribution.
No co-expressed genes in brain regions
Section III. Gene Ontology annotation
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|---|---|---|---|
| GO:0032395 | MHC class II receptor activity | NAS | 3036828 | |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
| GO:0002504 | antigen processing and presentation of peptide or polysaccharide antigen via MHC class II | IEA | - | |
| GO:0019882 | antigen processing and presentation | IEA | - | |
| GO:0006955 | immune response | IEA | - | |
| GO:0006955 | immune response | NAS | 3036828 | |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
| GO:0016020 | membrane | IEA | - | |
| GO:0005886 | plasma membrane | EXP | 11048639 |11827988 |15489916 |17652306 | |
| GO:0005887 | integral to plasma membrane | NAS | 3036828 | |
| GO:0042613 | MHC class II protein complex | IEA | - |
Section V. Pathway annotation
| Pathway name | Pathway size | # SZGR 2.0 genes in pathway | Info |
|---|---|---|---|
| KEGG CELL ADHESION MOLECULES CAMS | 134 | 93 | All SZGR 2.0 genes in this pathway |
| KEGG ANTIGEN PROCESSING AND PRESENTATION | 89 | 65 | All SZGR 2.0 genes in this pathway |
| KEGG INTESTINAL IMMUNE NETWORK FOR IGA PRODUCTION | 48 | 36 | All SZGR 2.0 genes in this pathway |
| KEGG TYPE I DIABETES MELLITUS | 44 | 38 | All SZGR 2.0 genes in this pathway |
| KEGG LEISHMANIA INFECTION | 72 | 56 | All SZGR 2.0 genes in this pathway |
| KEGG ASTHMA | 30 | 25 | All SZGR 2.0 genes in this pathway |
| KEGG AUTOIMMUNE THYROID DISEASE | 53 | 49 | All SZGR 2.0 genes in this pathway |
| KEGG SYSTEMIC LUPUS ERYTHEMATOSUS | 140 | 100 | All SZGR 2.0 genes in this pathway |
| KEGG ALLOGRAFT REJECTION | 38 | 34 | All SZGR 2.0 genes in this pathway |
| KEGG GRAFT VERSUS HOST DISEASE | 42 | 31 | All SZGR 2.0 genes in this pathway |
| KEGG VIRAL MYOCARDITIS | 73 | 58 | All SZGR 2.0 genes in this pathway |
| REACTOME MHC CLASS II ANTIGEN PRESENTATION | 91 | 61 | All SZGR 2.0 genes in this pathway |
| REACTOME TCR SIGNALING | 54 | 46 | All SZGR 2.0 genes in this pathway |
| REACTOME DOWNSTREAM TCR SIGNALING | 37 | 32 | All SZGR 2.0 genes in this pathway |
| REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | 16 | 15 | All SZGR 2.0 genes in this pathway |
| REACTOME TRANSLOCATION OF ZAP 70 TO IMMUNOLOGICAL SYNAPSE | 14 | 14 | All SZGR 2.0 genes in this pathway |
| REACTOME GENERATION OF SECOND MESSENGER MOLECULES | 27 | 25 | All SZGR 2.0 genes in this pathway |
| REACTOME PD1 SIGNALING | 18 | 14 | All SZGR 2.0 genes in this pathway |
| REACTOME COSTIMULATION BY THE CD28 FAMILY | 63 | 48 | All SZGR 2.0 genes in this pathway |
| REACTOME INTERFERON GAMMA SIGNALING | 63 | 48 | All SZGR 2.0 genes in this pathway |
| REACTOME INTERFERON SIGNALING | 159 | 116 | All SZGR 2.0 genes in this pathway |
| REACTOME IMMUNE SYSTEM | 933 | 616 | All SZGR 2.0 genes in this pathway |
| REACTOME ADAPTIVE IMMUNE SYSTEM | 539 | 350 | All SZGR 2.0 genes in this pathway |
| REACTOME CYTOKINE SIGNALING IN IMMUNE SYSTEM | 270 | 204 | All SZGR 2.0 genes in this pathway |
| TARTE PLASMA CELL VS PLASMABLAST UP | 398 | 262 | All SZGR 2.0 genes in this pathway |
| KONDO PROSTATE CANCER WITH H3K27ME3 | 196 | 93 | All SZGR 2.0 genes in this pathway |
| HELLER SILENCED BY METHYLATION UP | 282 | 183 | All SZGR 2.0 genes in this pathway |
| MCCABE BOUND BY HOXC6 | 469 | 239 | All SZGR 2.0 genes in this pathway |
| HOSHIDA LIVER CANCER SUBCLASS S1 | 237 | 159 | All SZGR 2.0 genes in this pathway |