Gene Page: CDH13

Summary
GeneID  1012
Symbol  CDH13
Synonyms  CDHH
Description  cadherin 13, H-cadherin (heart)
See related  HGNC:1753|MIM:601364|Ensembl:ENSG00000140945|HPRD:03219|
Locus tag  -
Gene type  protein-coding
Map location  16q24.2-q24.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 1 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
NCAPH0.980.66
DTL0.970.69
GTSE10.970.70
NUSAP10.970.71
TIMELESS0.970.63
KIF2C0.970.70
CDC45L0.970.68
ORC1L0.970.63
MCM100.970.71
TACC30.970.66
Top 10 negatively co-expressed genes
FBXO2-0.40-0.55
C5orf53-0.40-0.57
ASPHD1-0.39-0.54
HLA-F-0.38-0.50
SLC9A3R2-0.38-0.39
CCNI2-0.38-0.59
ADAP1-0.38-0.43
LHPP-0.37-0.48
PTH1R-0.37-0.45
CA4-0.37-0.57
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005509calcium ion bindingIEA-
GO:0042803protein homodimerization activityIEA-
GO:0030169low-density lipoprotein bindingIDA16013438 
GO:0045296cadherin bindingIDA10601632 
GO:0055100adiponectin bindingIEA-
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0002040sprouting angiogenesisIDA16873731 
GO:0001938positive regulation of endothelial cell proliferationIMP15364621 
GO:0001954positive regulation of cell-matrix adhesionIMP17573778 
GO:0030100regulation of endocytosisIMP17573778 
GO:0007162negative regulation of cell adhesionIDA14729458 
GO:0007156homophilic cell adhesionIEA-
GO:0007266Rho protein signal transductionIMP15703273 
GO:0008285negative regulation of cell proliferationIDA10737605 
GO:0016601Rac protein signal transductionIMP15703273 
GO:0016339calcium-dependent cell-cell adhesionIDA10601632 
GO:0050927positive regulation of positive chemotaxisIDA16013438 
GO:0042058regulation of epidermal growth factor receptor signaling pathwayIMP17573778 
GO:0030335positive regulation of cell migrationIDA14729458 
GO:0030032lamellipodium biogenesisIDA15703273 
GO:0045885positive regulation of survival gene product expressionIMP16099944 
GO:0050850positive regulation of calcium-mediated signalingIDA16013438 
GO:0043542endothelial cell migrationIDA14729458 
GO:0043616keratinocyte proliferationIDA15816843 
GO:0048661positive regulation of smooth muscle cell proliferationIMP15364621 
GO:0055096low density lipoprotein mediated signalingIDA16013438 
GO:0051668localization within membraneIMP17573778 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0043005neuron projectionIDAneuron, axon, neurite, dendrite (GO term level: 5)10737605 
GO:0005615extracellular spaceIDA16873731 
GO:0005737cytoplasmIDA10737605 
GO:0009897external side of plasma membraneIEA-
GO:0005901caveolaIDA9650591 
GO:0005886plasma membraneIEA-
GO:0031225anchored to membraneIEA-
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
REACTOME_CELL_CELL_COMMUNICATION 12077All SZGR genes in this pathway
REACTOME_ADHERENS_JUNCTIONS_INTERACTIONS 2720All SZGR genes in this pathway
REACTOME_CELL_CELL_JUNCTION_ORGANIZATION 5631All SZGR genes in this pathway
REACTOME_CELL_JUNCTION_ORGANIZATION 7843All SZGR genes in this pathway
DAVICIONI_MOLECULAR_ARMS_VS_ERMS_UP 332228All SZGR genes in this pathway
CHARAFE_BREAST_CANCER_LUMINAL_VS_BASAL_DN 455304All SZGR genes in this pathway
HORIUCHI_WTAP_TARGETS_UP 306188All SZGR genes in this pathway
SENESE_HDAC1_TARGETS_DN 260143All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_UP 722443All SZGR genes in this pathway
ENK_UV_RESPONSE_KERATINOCYTE_DN 485334All SZGR genes in this pathway
CHIN_BREAST_CANCER_COPY_NUMBER_DN 1610All SZGR genes in this pathway
MAHADEVAN_GIST_MORPHOLOGICAL_SWITCH 1511All SZGR genes in this pathway
SILIGAN_BOUND_BY_EWS_FLT1_FUSION 4734All SZGR genes in this pathway
DAIRKEE_TERT_TARGETS_UP 380213All SZGR genes in this pathway
HATADA_METHYLATED_IN_LUNG_CANCER_UP 390236All SZGR genes in this pathway
SCHLESINGER_METHYLATED_DE_NOVO_IN_CANCER 8864All SZGR genes in this pathway
SCHAEFFER_PROSTATE_DEVELOPMENT_48HR_UP 487286All SZGR genes in this pathway
BENPORATH_SUZ12_TARGETS 1038678All SZGR genes in this pathway
CHEN_NEUROBLASTOMA_COPY_NUMBER_GAINS 5035All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN 1237837All SZGR genes in this pathway
TRAYNOR_RETT_SYNDROM_DN 1914All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_24HR_DN 148102All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_14HR_DN 298200All SZGR genes in this pathway
KAYO_AGING_MUSCLE_DN 12376All SZGR genes in this pathway
KAAB_HEART_ATRIUM_VS_VENTRICLE_DN 261183All SZGR genes in this pathway
MCCLUNG_CREB1_TARGETS_UP 10072All SZGR genes in this pathway
MCDOWELL_ACUTE_LUNG_INJURY_DN 4833All SZGR genes in this pathway
MARCHINI_TRABECTEDIN_RESISTANCE_DN 4934All SZGR genes in this pathway
ACEVEDO_METHYLATED_IN_LIVER_CANCER_DN 940425All SZGR genes in this pathway
HOQUE_METHYLATED_IN_CANCER 5645All SZGR genes in this pathway
BONOME_OVARIAN_CANCER_SURVIVAL_SUBOPTIMAL_DEBULKING 510309All SZGR genes in this pathway
ZHANG_TLX_TARGETS_36HR_UP 221150All SZGR genes in this pathway
ZHANG_TLX_TARGETS_60HR_UP 293203All SZGR genes in this pathway
ZHANG_TLX_TARGETS_UP 10878All SZGR genes in this pathway
MIKKELSEN_PARTIALLY_REPROGRAMMED_TO_PLURIPOTENCY 106All SZGR genes in this pathway
MEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3 1069729All SZGR genes in this pathway
HOSHIDA_LIVER_CANCER_LATE_RECURRENCE_UP 6242All SZGR genes in this pathway
LI_PROSTATE_CANCER_EPIGENETIC 3022All SZGR genes in this pathway
NAKAMURA_ADIPOGENESIS_LATE_UP 10467All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_30MIN_DN 15099All SZGR genes in this pathway
AZARE_NEOPLASTIC_TRANSFORMATION_BY_STAT3_UP 12170All SZGR genes in this pathway
LEE_BMP2_TARGETS_UP 745475All SZGR genes in this pathway
KOINUMA_TARGETS_OF_SMAD2_OR_SMAD3 824528All SZGR genes in this pathway
IKEDA_MIR30_TARGETS_DN 2724All SZGR genes in this pathway
WAKABAYASHI_ADIPOGENESIS_PPARG_BOUND_8D 658397All SZGR genes in this pathway
PEDRIOLI_MIR31_TARGETS_DN 418245All SZGR genes in this pathway
ROESSLER_LIVER_CANCER_METASTASIS_UP 10772All SZGR genes in this pathway
LIM_MAMMARY_STEM_CELL_UP 489314All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-181224230m8hsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-30-5p83891Ahsa-miR-30a-5pUGUAAACAUCCUCGACUGGAAG
hsa-miR-30cbrainUGUAAACAUCCUACACUCUCAGC
hsa-miR-30dSZUGUAAACAUCCCCGACUGGAAG
hsa-miR-30bSZUGUAAACAUCCUACACUCAGCU
hsa-miR-30e-5pUGUAAACAUCCUUGACUGGA
miR-3702652711Ahsa-miR-370brainGCCUGCUGGGGUGGAACCUGG
miR-493-5p8738801A,m8hsa-miR-493-5pUUGUACAUGGUAGGCUUUCAUU
miR-495993999m8hsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
miR-543225231m8hsa-miR-543AAACAUUCGCGGUGCACUUCU
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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