Gene Page: TCERG1

Summary
GeneID  10915
Symbol  TCERG1
Synonyms  CA150|MGC133200|TAF2S
Description  transcription elongation regulator 1
See related  HGNC:15630|MIM:605409|Ensembl:ENSG00000113649|HPRD:10393|
Locus tag  -
Gene type  protein-coding
Map location  5q31
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.0032 
GSMA_IIEgenome scan meta-analysis (European-ancestry samples)Psr: 0.01718 
GSMA_IIAgenome scan meta-analysis (All samples)Psr: 0.00459 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
CKAP50.960.97
RBM160.960.97
SMEK10.950.96
KIAA09470.950.96
NFX10.950.96
NUP1530.940.96
HP1BP30.940.96
FBXO110.940.96
RNASEN0.940.95
TTC30.940.97
Top 10 negatively co-expressed genes
AF347015.31-0.82-0.90
MT-CO2-0.82-0.91
FXYD1-0.81-0.89
AF347015.27-0.80-0.87
AF347015.33-0.80-0.87
MT-CYB-0.79-0.87
AF347015.8-0.78-0.89
HIGD1B-0.78-0.89
S100B-0.78-0.84
IFI27-0.78-0.87
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003702RNA polymerase II transcription factor activityTAS9315662 
GO:0003713transcription coactivator activityTAS9315662 
GO:0005515protein bindingIPI15383276 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006355regulation of transcription, DNA-dependentIEA-
GO:0006350transcriptionIEA-
GO:0006366transcription from RNA polymerase II promoterTAS9315662 
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusTAS9315662 
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
BARD1-BRCA1 associated RING domain 1-HPRD15383276 
CHAF1ACAF-1 | CAF1 | CAF1B | CAF1P150 | MGC71229 | P150chromatin assembly factor 1, subunit A (p150)-HPRD,BioGRID15456888 
CHD8DKFZp686N17164 | HELSNF1 | KIAA1564chromodomain helicase DNA binding protein 8Affinity Capture-MSBioGRID15456888 
DNAJB9DKFZp564F1862 | ERdj4 | MDG1 | MST049 | MSTP049DnaJ (Hsp40) homolog, subfamily B, member 9-HPRD,BioGRID15456888 
FANCAFA | FA-H | FA1 | FAA | FACA | FAH | FANCH | MGC75158Fanconi anemia, complementation group ATwo-hybridBioGRID14499622 
FANCCFA3 | FAC | FACC | FLJ14675Fanconi anemia, complementation group CTwo-hybridBioGRID14499622 
HNRNPH1DKFZp686A15170 | HNRPH | HNRPH1 | hnRNPHheterogeneous nuclear ribonucleoprotein H1 (H)-HPRD,BioGRID15456888 
HNRNPMDKFZp547H118 | HNRNPM4 | HNRPM | HNRPM4 | HTGR1 | NAGR1heterogeneous nuclear ribonucleoprotein M-HPRD,BioGRID15456888 
HSPA1AFLJ54303 | FLJ54370 | FLJ54392 | FLJ54408 | FLJ75127 | HSP70-1 | HSP70-1A | HSP70I | HSP72 | HSPA1 | HSPA1Bheat shock 70kDa protein 1A-HPRD15456888 
HSPA4APG-2 | HS24/P52 | MGC131852 | RY | hsp70 | hsp70RYheat shock 70kDa protein 4Affinity Capture-MSBioGRID15456888 
HSPA5BIP | FLJ26106 | GRP78 | MIF2heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa)-HPRD,BioGRID15456888 
HSPA8HSC54 | HSC70 | HSC71 | HSP71 | HSP73 | HSPA10 | LAP1 | MGC131511 | MGC29929 | NIP71heat shock 70kDa protein 8-HPRD,BioGRID15456888 
HTTHD | IT15huntingtinHtt interacts with CA150.BIND11172033 
-HPRD,BioGRID11172033 
LUC7LFLJ10231 | LUC7-LIKE | LUC7B1 | SR+89LUC7-like (S. cerevisiae)-HPRD15383276 
MED21SRB7 | SURB7mediator complex subunit 21Affinity Capture-WesternBioGRID9315662 
NPM1B23 | MGC104254 | NPMnucleophosmin (nucleolar phosphoprotein B23, numatrin)-HPRD,BioGRID15456888 
PCBP1HNRPE1 | HNRPX | hnRNP-E1 | hnRNP-Xpoly(rC) binding protein 1-HPRD,BioGRID15456888 
PIAS4FLJ12419 | MGC35296 | PIASY | Piasg | ZMIZ6protein inhibitor of activated STAT, 4-HPRD15383276 
POLR2AMGC75453 | POLR2 | POLRA | RPB1 | RPBh1 | RPO2 | RPOL2 | RpIILS | hRPB220 | hsRPB1polymerase (RNA) II (DNA directed) polypeptide A, 220kDa-HPRD,BioGRID9315662 |10908677 
RNU1AHU1-1 | RNU1 | RNU1G4 | Rnu1a1 | U1RNA, U1A small nuclearAffinity Capture-RNABioGRID15456888 
RNU2-1RNU2 | U2RNA, U2 small nuclear 1Affinity Capture-RNABioGRID15456888 
SETDB1ESET | KG1T | KIAA0067 | KMT1ESET domain, bifurcated 1-HPRD15383276 
SF1D11S636 | ZFM1 | ZNF162splicing factor 1-HPRD,BioGRID11604498 
SF3A1PRP21 | PRPF21 | SAP114 | SF3A120splicing factor 3a, subunit 1, 120kDa-HPRD,BioGRID15456888 
SF3A3PRP9 | PRPF9 | SAP61 | SF3a60splicing factor 3a, subunit 3, 60kDa-HPRD,BioGRID15456888 
SF3B1PRP10 | PRPF10 | SAP155 | SF3b155splicing factor 3b, subunit 1, 155kDa-HPRD,BioGRID15456888 
SF3B2SAP145 | SF3B145 | SF3b1 | SF3b150splicing factor 3b, subunit 2, 145kDa-HPRD,BioGRID15456888 
SF3B4MGC10828 | SAP49 | SF3b49splicing factor 3b, subunit 4, 49kDa-HPRD,BioGRID15456888 
SFRS1ASF | MGC5228 | SF2 | SF2p33 | SRp30asplicing factor, arginine/serine-rich 1-HPRD,BioGRID15456888 
TPM4-tropomyosin 4-HPRD,BioGRID15456888 
U2AF2U2AF65U2 small nuclear RNA auxiliary factor 2-HPRD,BioGRID15456888 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
KEGG_SPLICEOSOME 12872All SZGR genes in this pathway
ONKEN_UVEAL_MELANOMA_UP 783507All SZGR genes in this pathway
DIAZ_CHRONIC_MEYLOGENOUS_LEUKEMIA_UP 1382904All SZGR genes in this pathway
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_8D_DN 205127All SZGR genes in this pathway
ENK_UV_RESPONSE_KERATINOCYTE_DN 485334All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN 17811082All SZGR genes in this pathway
GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN 770415All SZGR genes in this pathway
BERENJENO_TRANSFORMED_BY_RHOA_UP 536340All SZGR genes in this pathway
SEIDEN_ONCOGENESIS_BY_MET 8853All SZGR genes in this pathway
SCHLOSSER_MYC_TARGETS_REPRESSED_BY_SERUM 15993All SZGR genes in this pathway
PUJANA_XPRSS_INT_NETWORK 168103All SZGR genes in this pathway
PUJANA_BRCA1_PCC_NETWORK 16521023All SZGR genes in this pathway
PUJANA_BRCA2_PCC_NETWORK 423265All SZGR genes in this pathway
PUJANA_ATM_PCC_NETWORK 1442892All SZGR genes in this pathway
PUJANA_CHEK2_PCC_NETWORK 779480All SZGR genes in this pathway
PUJANA_BRCA_CENTERED_NETWORK 11772All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_DN 1024594All SZGR genes in this pathway
MANTOVANI_VIRAL_GPCR_SIGNALING_DN 4937All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS 988594All SZGR genes in this pathway
LI_WILMS_TUMOR_VS_FETAL_KIDNEY_1_DN 163115All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN 1237837All SZGR genes in this pathway
WANG_SMARCE1_TARGETS_DN 371218All SZGR genes in this pathway
YAMAZAKI_TCEB3_TARGETS_UP 175116All SZGR genes in this pathway
MARTINEZ_RESPONSE_TO_TRABECTEDIN_DN 271175All SZGR genes in this pathway
MARSON_BOUND_BY_E2F4_UNSTIMULATED 728415All SZGR genes in this pathway
MUELLER_PLURINET 299189All SZGR genes in this pathway
SHAFFER_IRF4_TARGETS_IN_ACTIVATED_DENDRITIC_CELL 6549All SZGR genes in this pathway
PUJANA_BREAST_CANCER_WITH_BRCA1_MUTATED_UP 5627All SZGR genes in this pathway
CAIRO_HEPATOBLASTOMA_CLASSES_UP 605377All SZGR genes in this pathway
YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_14 14386All SZGR genes in this pathway
WHITFIELD_CELL_CYCLE_M_G1 14895All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN 19721213All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_2_DN 336211All SZGR genes in this pathway
LEE_BMP2_TARGETS_DN 882538All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-141/200a3003071A,m8hsa-miR-141UAACACUGUCUGGUAAAGAUGG
hsa-miR-200aUAACACUGUCUGGUAACGAUGU
miR-181773779m8hsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
hsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-2231871931Ahsa-miR-223UGUCAGUUUGUCAAAUACCCC
miR-224276282m8hsa-miR-224CAAGUCACUAGUGGUUCCGUUUA
miR-2445511Ahsa-miR-24SZUGGCUCAGUUCAGCAGGAACAG
miR-299-5p8468521Ahsa-miR-299-5pUGGUUUACCGUCCCACAUACAU
miR-369-3p4754811Ahsa-miR-369-3pAAUAAUACAUGGUUGAUCUUU
miR-3744754821A,m8hsa-miR-374UUAUAAUACAACCUGAUAAGUG
miR-543816822m8hsa-miR-543AAACAUUCGCGGUGCACUUCU
hsa-miR-543AAACAUUCGCGGUGCACUUCU
miR-74574631Ahsa-miR-7SZUGGAAGACUAGUGAUUUUGUUG
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.