Gene Page

Home
Datasets
Search
Analysis & Tools
Documents
About SZGR
Quick search: (e.g. 207 or AKT)

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

Release Site Map Support Contact us

Gene Page: PCDH17

Summary

GeneID

27253

Symbol

PCDH17

Synonyms

PCDH68|PCH68

Description

protocadherin 17

Locus tag

Gene type

protein-coding

Map location

13q21.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005509

calcium ion binding

IEA

GO:0005515

protein binding

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007155

cell adhesion

IEA

GO:0007156

homophilic cell adhesion

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0016021

integral to membrane

IEA

GO:0005886

plasma membrane

IEA

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
DAVICIONI_TARGETS_OF_PAX_FOXO1_FUSIONS_UP	255	177	All SZGR genes in this pathway
ROY_WOUND_BLOOD_VESSEL_UP	50	30	All SZGR genes in this pathway
HORIUCHI_WTAP_TARGETS_UP	306	188	All SZGR genes in this pathway
GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_GREY_DN	74	44	All SZGR genes in this pathway
TAKEDA_TARGETS_OF_NUP98_HOXA9_FUSION_6HR_UP	85	54	All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_DN	1375	806	All SZGR genes in this pathway
BEGUM_TARGETS_OF_PAX3_FOXO1_FUSION_UP	60	45	All SZGR genes in this pathway
BENPORATH_SUZ12_TARGETS	1038	678	All SZGR genes in this pathway
BENPORATH_EED_TARGETS	1062	725	All SZGR genes in this pathway
BENPORATH_ES_WITH_H3K27ME3	1118	744	All SZGR genes in this pathway
BENPORATH_PRC2_TARGETS	652	441	All SZGR genes in this pathway
REN_ALVEOLAR_RHABDOMYOSARCOMA_UP	98	64	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_DN	830	547	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP	1691	1088	All SZGR genes in this pathway
ABE_VEGFA_TARGETS_30MIN	29	21	All SZGR genes in this pathway
RIGGI_EWING_SARCOMA_PROGENITOR_UP	430	288	All SZGR genes in this pathway
BONOME_OVARIAN_CANCER_SURVIVAL_SUBOPTIMAL_DEBULKING	510	309	All SZGR genes in this pathway
BOQUEST_STEM_CELL_DN	216	143	All SZGR genes in this pathway
LIN_NPAS4_TARGETS_UP	163	100	All SZGR genes in this pathway
CADWELL_ATG16L1_TARGETS_UP	93	56	All SZGR genes in this pathway
MEISSNER_BRAIN_HCP_WITH_H3K4ME3_AND_H3K27ME3	1069	729	All SZGR genes in this pathway
ROME_INSULIN_TARGETS_IN_MUSCLE_DN	204	114	All SZGR genes in this pathway
WINNEPENNINCKX_MELANOMA_METASTASIS_UP	162	86	All SZGR genes in this pathway
HOELZEL_NF1_TARGETS_UP	139	93	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway
KUMAR_PATHOGEN_LOAD_BY_MACROPHAGES	275	155	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-1/206	589	596	1A,m8	hsa-miR-1	UGGAAUGUAAAGAAGUAUGUA
				hsa-miR-206^SZ	UGGAAUGUAAGGAAGUGUGUGG
				hsa-miR-613	AGGAAUGUUCCUUCUUUGCC
miR-124/506	2016	2022	m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	2016	2022	m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-141/200a	2752	2758	1A	hsa-miR-141	UAACACUGUCUGGUAAAGAUGG
miR-141/200a	2752	2758	1A	hsa-miR-200a	UAACACUGUCUGGUAACGAUGU
miR-15/16/195/424/497	105	111	m8	hsa-miR-15a^brain	UAGCAGCACAUAAUGGUUUGUG
				hsa-miR-16^brain	UAGCAGCACGUAAAUAUUGGCG
				hsa-miR-15b^brain	UAGCAGCACAUCAUGGUUUACA
				hsa-miR-195^SZ	UAGCAGCACAGAAAUAUUGGC
				hsa-miR-424	CAGCAGCAAUUCAUGUUUUGAA
				hsa-miR-497	CAGCAGCACACUGUGGUUUGU
miR-182	2939	2945	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-203.1	545	551	m8	hsa-miR-203	UGAAAUGUUUAGGACCACUAG
miR-217	499	505	1A	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-217	499	505	1A	hsa-miR-217	UACUGCAUCAGGAACUGAUUGGAU
miR-219	309	315	m8	hsa-miR-219^brain	UGAUUGUCCAAACGCAAUUCU
miR-224	388	394	1A	hsa-miR-224	CAAGUCACUAGUGGUUCCGUUUA
miR-24	1049	1055	1A	hsa-miR-24^SZ	UGGCUCAGUUCAGCAGGAACAG
miR-29	1940	1946	m8	hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU
				hsa-miR-29a^SZ	UAGCACCAUCUGAAAUCGGUU
				hsa-miR-29b^SZ	UAGCACCAUUUGAAAUCAGUGUU
				hsa-miR-29c^SZ	UAGCACCAUUUGAAAUCGGU
miR-30-3p	1323	1329	m8	hsa-miR-30a-3p	CUUUCAGUCGGAUGUUUGCAGC
miR-30-3p	1323	1329	m8	hsa-miR-30e-3p	CUUUCAGUCGGAUGUUUACAGC
miR-30-5p	998	1005	1A,m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
				hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-339	84	90	1A	hsa-miR-339	UCCCUGUCCUCCAGGAGCUCA
miR-376	1174	1180	m8	hsa-miR-376a	AUCAUAGAGGAAAAUCCACGU
miR-376	1174	1180	m8	hsa-miR-376b	AUCAUAGAGGAAAAUCCAUGUU
miR-378	922	928	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-378	922	928	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-378*	505	511	1A	hsa-miR-422b	CUGGACUUGGAGUCAGAAGGCC
miR-378*	505	511	1A	hsa-miR-422a	CUGGACUUAGGGUCAGAAGGCC
miR-379	1261	1268	1A,m8	hsa-miR-379^brain	UGGUAGACUAUGGAACGUA
miR-383	352	359	1A,m8	hsa-miR-383^brain	AGAUCAGAAGGUGAUUGUGGCU
miR-495	3606	3613	1A,m8	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-496	673	679	1A	hsa-miR-496	AUUACAUGGCCAAUCUC
miR-504	423	430	1A,m8	hsa-miR-504	AGACCCUGGUCUGCACUCUAU
miR-542-3p	2733	2739	m8	hsa-miR-542-3p	UGUGACAGAUUGAUAACUGAAA
miR-96	2939	2945	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC
miR-96	2939	2945	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.