Gene Page

Home
Datasets
Search
Analysis & Tools
Documents
About SZGR
Quick search: (e.g. 207 or AKT)

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

Release Site Map Support Contact us

Gene Page: TNRC6A

Summary

GeneID

27327

Symbol

TNRC6A

Synonyms

CAGH26|DKFZp666E117|FLJ22043|GW1|GW182|KIAA1460|MGC75384|TNRC6

Description

trinucleotide repeat containing 6A

Locus tag

Gene type

protein-coding

Map location

16p11.2

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GSMA_IIE

genome scan meta-analysis (European-ancestry samples)

Psr: 0.01775

Literature

High-throughput literature-search

Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]

Click to show detail

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0000166

nucleotide binding

IEA

GO:0003723

RNA binding

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005737

cytoplasm

IEA

Interactions

Shown by Network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
EIF2C2	AGO2 \| MGC3183 \| Q10	eukaryotic translation initiation factor 2C, 2	Reconstituted Complex	BioGRID	17938239

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
REACTOME_PRE_NOTCH_TRANSCRIPTION_AND_TRANSLATION	29	17	All SZGR genes in this pathway
REACTOME_PRE_NOTCH_EXPRESSION_AND_PROCESSING	44	24	All SZGR genes in this pathway
REACTOME_REGULATORY_RNA_PATHWAYS	26	12	All SZGR genes in this pathway
REACTOME_SIGNALING_BY_NOTCH	103	64	All SZGR genes in this pathway
LIU_PROSTATE_CANCER_DN	481	290	All SZGR genes in this pathway
ODONNELL_TFRC_TARGETS_DN	139	76	All SZGR genes in this pathway
MARKEY_RB1_ACUTE_LOF_DN	228	137	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
GAUSSMANN_MLL_AF4_FUSION_TARGETS_A_UP	191	128	All SZGR genes in this pathway
SILIGAN_BOUND_BY_EWS_FLT1_FUSION	47	34	All SZGR genes in this pathway
GROSS_HYPOXIA_VIA_ELK3_UP	209	139	All SZGR genes in this pathway
GROSS_HYPOXIA_VIA_HIF1A_UP	77	49	All SZGR genes in this pathway
GROSS_HYPOXIA_VIA_ELK3_AND_HIF1A_DN	103	71	All SZGR genes in this pathway
SCHAEFFER_PROSTATE_DEVELOPMENT_6HR_DN	514	330	All SZGR genes in this pathway
BENPORATH_NANOG_TARGETS	988	594	All SZGR genes in this pathway
BENPORATH_OCT4_TARGETS	290	172	All SZGR genes in this pathway
BENPORATH_SOX2_TARGETS	734	436	All SZGR genes in this pathway
BENPORATH_NOS_TARGETS	179	105	All SZGR genes in this pathway
CHEN_NEUROBLASTOMA_COPY_NUMBER_GAINS	50	35	All SZGR genes in this pathway
BILD_HRAS_ONCOGENIC_SIGNATURE	261	166	All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_UP	566	371	All SZGR genes in this pathway
MARTINEZ_RB1_TARGETS_DN	543	317	All SZGR genes in this pathway
MARTINEZ_TP53_TARGETS_DN	593	372	All SZGR genes in this pathway
MARTINEZ_RB1_AND_TP53_TARGETS_DN	591	366	All SZGR genes in this pathway
WANG_TUMOR_INVASIVENESS_UP	374	247	All SZGR genes in this pathway
ZHANG_TLX_TARGETS_60HR_DN	277	166	All SZGR genes in this pathway
CHIANG_LIVER_CANCER_SUBCLASS_UNANNOTATED_UP	85	50	All SZGR genes in this pathway
PILON_KLF1_TARGETS_DN	1972	1213	All SZGR genes in this pathway
IKEDA_MIR30_TARGETS_UP	116	87	All SZGR genes in this pathway
PECE_MAMMARY_STEM_CELL_DN	146	88	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-101	1284	1290	1A	hsa-miR-101	UACAGUACUGUGAUAACUGAAG
miR-122	206	212	m8	hsa-miR-122a	UGGAGUGUGACAAUGGUGUUUGU
miR-129-5p	1068	1074	1A	hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
				hsa-miR-129^brain	CUUUUUGCGGUCUGGGCUUGC
				hsa-miR-129-5p	CUUUUUGCGGUCUGGGCUUGCU
miR-130/301	392	398	m8	hsa-miR-130a^brain	CAGUGCAAUGUUAAAAGGGCAU
				hsa-miR-301	CAGUGCAAUAGUAUUGUCAAAGC
				hsa-miR-130b^brain	CAGUGCAAUGAUGAAAGGGCAU
				hsa-miR-454-3p	UAGUGCAAUAUUGCUUAUAGGGUUU
miR-139	1830	1836	m8	hsa-miR-139^brain	UCUACAGUGCACGUGUCU
miR-143	1924	1930	1A	hsa-miR-143^brain	UGAGAUGAAGCACUGUAGCUCA
miR-144	1283	1290	1A,m8	hsa-miR-144	UACAGUAUAGAUGAUGUACUAG
miR-146	935	941	1A	hsa-miR-146a	UGAGAACUGAAUUCCAUGGGUU
miR-146	935	941	1A	hsa-miR-146b^brain	UGAGAACUGAAUUCCAUAGGCU
miR-148/152	1026	1032	1A	hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
				hsa-miR-148a	UCAGUGCACUACAGAACUUUGU
				hsa-miR-152^brain	UCAGUGCAUGACAGAACUUGGG
				hsa-miR-148b	UCAGUGCAUCACAGAACUUUGU
miR-150	2362	2368	m8	hsa-miR-150	UCUCCCAACCCUUGUACCAGUG
miR-153	1277	1283	m8	hsa-miR-153	UUGCAUAGUCACAAAAGUGA
miR-17-5p/20/93.mr/106/519.d	692	698	m8	hsa-miR-17-5p	CAAAGUGCUUACAGUGCAGGUAGU
				hsa-miR-20a^brain	UAAAGUGCUUAUAGUGCAGGUAG
				hsa-miR-106a	AAAAGUGCUUACAGUGCAGGUAGC
				hsa-miR-106b^SZ	UAAAGUGCUGACAGUGCAGAU
				hsa-miR-20b^SZ	CAAAGUGCUCAUAGUGCAGGUAG
				hsa-miR-519d	CAAAGUGCCUCCCUUUAGAGUGU
miR-182	1065	1071	1A	hsa-miR-182	UUUGGCAAUGGUAGAACUCACA
miR-19	391	397	m8	hsa-miR-19a	UGUGCAAAUCUAUGCAAAACUGA
miR-19	391	397	m8	hsa-miR-19b	UGUGCAAAUCCAUGCAAAACUGA
miR-190	138	145	1A,m8	hsa-miR-190	UGAUAUGUUUGAUAUAUUAGGU
miR-23	1811	1817	m8	hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
				hsa-miR-23a^brain	AUCACAUUGCCAGGGAUUUCC
				hsa-miR-23b^brain	AUCACAUUGCCAGGGAUUACC
miR-26	153	160	1A,m8	hsa-miR-26a^brain	UUCAAGUAAUCCAGGAUAGGC
miR-26	153	160	1A,m8	hsa-miR-26b^SZ	UUCAAGUAAUUCAGGAUAGGUU
miR-299-5p	1626	1632	1A	hsa-miR-299-5p	UGGUUUACCGUCCCACAUACAU
miR-30-5p	455	461	m8	hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
				hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
				hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
				hsa-miR-30a-5p	UGUAAACAUCCUCGACUGGAAG
				hsa-miR-30c^brain	UGUAAACAUCCUACACUCUCAGC
				hsa-miR-30d^SZ	UGUAAACAUCCCCGACUGGAAG
				hsa-miR-30b^SZ	UGUAAACAUCCUACACUCAGCU
				hsa-miR-30e-5p	UGUAAACAUCCUUGACUGGA
miR-31	2139	2145	1A	hsa-miR-31	AGGCAAGAUGCUGGCAUAGCUG
miR-323	1810	1817	1A,m8	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-323	1810	1817	1A,m8	hsa-miR-323^brain	GCACAUUACACGGUCGACCUCU
miR-330	2248	2254	1A	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-330	2248	2254	1A	hsa-miR-330^brain	GCAAAGCACACGGCCUGCAGAGA
miR-342	1813	1819	1A	hsa-miR-342^brain	UCUCACACAGAAAUCGCACCCGUC
miR-369-3p	174	180	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-369-3p	174	180	1A	hsa-miR-369-3p	AAUAAUACAUGGUUGAUCUUU
miR-374	1413	1420	1A,m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-374	1413	1420	1A,m8	hsa-miR-374	UUAUAAUACAACCUGAUAAGUG
miR-378	939	945	1A	hsa-miR-378	CUCCUGACUCCAGGUCCUGUGU
miR-381	1321	1327	1A	hsa-miR-381	UAUACAAGGGCAAGCUCUCUGU
miR-452	1348	1354	m8	hsa-miR-452	UGUUUGCAGAGGAAACUGAGAC
miR-485-3p	2114	2120	m8	hsa-miR-485-3p	GUCAUACACGGCUCUCCUCUCU
miR-485-5p	1931	1937	1A	hsa-miR-485-5p	AGAGGCUGGCCGUGAUGAAUUC
miR-495	763	769	m8	hsa-miR-495^brain	AAACAAACAUGGUGCACUUCUUU
miR-7	793	799	1A	hsa-miR-7^SZ	UGGAAGACUAGUGAUUUUGUUG
miR-9	2238	2244	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-96	1065	1071	1A	hsa-miR-96^brain	UUUGGCACUAGCACAUUUUUGC

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.