Gene Page: GPM6A

Summary
GeneID  2823
Symbol  GPM6A
Synonyms  GPM6|M6A
Description  glycoprotein M6A
See related  HGNC:4460|MIM:601275|Ensembl:ENSG00000150625|HPRD:03174|
Locus tag  -
Gene type  protein-coding
Map location  4q34
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
LIMS20.810.77
RHBDF10.810.82
CHAD0.750.83
SLC7A100.730.75
OLIG10.720.85
MMD20.710.79
CSPG40.710.65
RIN30.710.84
DOCK60.700.66
NEU40.700.76
Top 10 negatively co-expressed genes
KLHDC2-0.61-0.65
COQ3-0.60-0.74
SETD4-0.58-0.67
FARSB-0.57-0.68
UBE2D2-0.57-0.63
FRG1-0.56-0.76
ASNSD1-0.56-0.73
TSG101-0.56-0.73
POLB-0.56-0.78
SUPV3L1-0.56-0.72
Gene Ontology
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0016020membraneIEA-
GO:0016021integral to membraneIEA-
GO:0009986cell surfaceIDA12493773 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
ZHOU_INFLAMMATORY_RESPONSE_LIVE_UP 485293All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN 537339All SZGR genes in this pathway
BEGUM_TARGETS_OF_PAX3_FOXO1_FUSION_UP 6045All SZGR genes in this pathway
SCHLOSSER_SERUM_RESPONSE_DN 712443All SZGR genes in this pathway
SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM4 261153All SZGR genes in this pathway
PASQUALUCCI_LYMPHOMA_BY_GC_STAGE_UP 283177All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_DN 1237837All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_14HR_UP 156101All SZGR genes in this pathway
MCLACHLAN_DENTAL_CARIES_DN 245144All SZGR genes in this pathway
DOUGLAS_BMI1_TARGETS_DN 314188All SZGR genes in this pathway
YEGNASUBRAMANIAN_PROSTATE_CANCER 12860All SZGR genes in this pathway
HELLER_HDAC_TARGETS_UP 317208All SZGR genes in this pathway
HELLER_HDAC_TARGETS_SILENCED_BY_METHYLATION_UP 461298All SZGR genes in this pathway
WALLACE_PROSTATE_CANCER_RACE_UP 299167All SZGR genes in this pathway
ZHENG_GLIOBLASTOMA_PLASTICITY_UP 250168All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_C_D_DN 252155All SZGR genes in this pathway
YAGI_AML_WITH_11Q23_REARRANGED 351238All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_PCA1_UP 10166All SZGR genes in this pathway
MIKKELSEN_NPC_ICP_WITH_H3K4ME3 445257All SZGR genes in this pathway
KARLSSON_TGFB1_TARGETS_DN 207139All SZGR genes in this pathway
KIM_ALL_DISORDERS_CALB1_CORR_UP 548370All SZGR genes in this pathway
VERHAAK_GLIOBLASTOMA_PRONEURAL 177132All SZGR genes in this pathway
KIM_PTEN_TARGETS_UP 189All SZGR genes in this pathway
RAO_BOUND_BY_SALL4 227149All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-133124612521Ahsa-miR-133aUUGGUCCCCUUCAACCAGCUGU
hsa-miR-133bUUGGUCCCCUUCAACCAGCUA
miR-148/152138613931A,m8hsa-miR-148aUCAGUGCACUACAGAACUUUGU
hsa-miR-152brainUCAGUGCAUGACAGAACUUGGG
hsa-miR-148bUCAGUGCAUCACAGAACUUUGU
miR-181110811141Ahsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-200bc/429167516811Ahsa-miR-200bUAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200cUAAUACUGCCGGGUAAUGAUGG
hsa-miR-429UAAUACUGUCUGGUAAAACCGU
hsa-miR-200bUAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200cUAAUACUGCCGGGUAAUGAUGG
hsa-miR-429UAAUACUGUCUGGUAAAACCGU
hsa-miR-200bUAAUACUGCCUGGUAAUGAUGAC
hsa-miR-200cUAAUACUGCCGGGUAAUGAUGG
hsa-miR-429UAAUACUGUCUGGUAAAACCGU
miR-204/211433439m8hsa-miR-204brainUUCCCUUUGUCAUCCUAUGCCU
hsa-miR-211UUCCCUUUGUCAUCCUUCGCCU
miR-205892898m8hsa-miR-205UCCUUCAUUCCACCGGAGUCUG
miR-217164916561A,m8hsa-miR-217UACUGCAUCAGGAACUGAUUGGAU
miR-218914920m8hsa-miR-218brainUUGUGCUUGAUCUAACCAUGU
miR-221/222183518411Ahsa-miR-221brainAGCUACAUUGUCUGCUGGGUUUC
hsa-miR-222brainAGCUACAUCUGGCUACUGGGUCUC
miR-282082151A,m8hsa-miR-28brainAAGGAGCUCACAGUCUAUUGAG
miR-323868874m8hsa-miR-323brainGCACAUUACACGGUCGACCUCU
miR-3285056m8hsa-miR-328brainCUGGCCCUCUCUGCCCUUCCGU
miR-33018301836m8hsa-miR-330brainGCAAAGCACACGGCCUGCAGAGA
miR-365184218481Ahsa-miR-365UAAUGCCCCUAAAAAUCCUUAU
miR-369-3p170217081Ahsa-miR-369-3pAAUAAUACAUGGUUGAUCUUU
miR-37417021708m8hsa-miR-374UUAUAAUACAACCUGAUAAGUG
miR-376c10551061m8hsa-miR-376cAACAUAGAGGAAAUUCCACG
miR-409-5p423429m8hsa-miR-409-5pAGGUUACCCGAGCAACUUUGCA
miR-44816471653m8hsa-miR-448UUGCAUAUGUAGGAUGUCCCAU
miR-485-3p9961002m8hsa-miR-485-3pGUCAUACACGGCUCUCCUCUCU
miR-493-5p146514711Ahsa-miR-493-5pUUGUACAUGGUAGGCUUUCAUU
miR-4956176231Ahsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
hsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
miR-5005625691A,m8hsa-miR-500AUGCACCUGGGCAAGGAUUCUG
miR-9618741880m8hsa-miR-96brainUUUGGCACUAGCACAUUUUUGC
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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