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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

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Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

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Gene Page: PAFAH1B3

Summary

GeneID

5050

Symbol

PAFAH1B3

Synonyms

Description

platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa

Locus tag

Gene type

protein-coding

Map location

19q13.1

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

GO_Annotation

Mapping neuro-related keywords to Gene Ontology annotations

Hits with neuro-related keywords: 1

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

SMAD4

0.96

0.93

STAG1

0.96

0.93

SP3

0.96

0.94

DHX9

0.96

0.93

PPM1D

0.95

0.94

ZFP161

0.95

0.94

HNRNPK

0.95

0.93

SFRS1

0.95

0.94

ALDH18A1

0.95

0.93

CORO1C

0.95

0.93

Top 10 negatively co-expressed genes

FXYD1

-0.70

-0.87

MT-CO2

-0.70

-0.86

AF347015.31

-0.69

-0.85

IFI27

-0.69

-0.86

HLA-F

-0.69

-0.76

AF347015.33

-0.68

-0.82

AF347015.27

-0.67

-0.82

C5orf53

-0.67

-0.71

PTH1R

-0.67

-0.75

MT-CYB

-0.66

-0.82

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0003847

1-alkyl-2-acetylglycerophosphocholine esterase activity

IEA

GO:0005515

protein binding

IPI

16189514

GO:0016788

hydrolase activity, acting on ester bonds

IEA

Biological process

GO term

Evidence

Neuro keywords

PubMed ID

GO:0007399

nervous system development

TAS

neurite (GO term level: 5)

7669037

GO:0016042

lipid catabolic process

IEA

Cellular component

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005737

cytoplasm

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
BRD7	BP75 \| CELTIX1 \| NAG4	bromodomain containing 7	Two-hybrid	BioGRID	16169070
C14orf1	ERG28 \| NET51	chromosome 14 open reading frame 1	Two-hybrid	BioGRID	16169070
C1orf103	FLJ11269 \| RIF1 \| RP11-96K19.1	chromosome 1 open reading frame 103	Two-hybrid	BioGRID	16169070
C7orf64	DKFZP564O0523 \| DKFZp686D1651 \| HSPC304	chromosome 7 open reading frame 64	Two-hybrid	BioGRID	16169070
CCDC90B	MDS011 \| MDS025 \| MGC104239	coiled-coil domain containing 90B	Two-hybrid	BioGRID	16169070
CHMP7	MGC29816	CHMP family, member 7	Two-hybrid	BioGRID	16189514
COPS6	CSN6 \| MOV34-34KD	COP9 constitutive photomorphogenic homolog subunit 6 (Arabidopsis)	Two-hybrid	BioGRID	16169070
CRMP1	DPYSL1 \| DRP-1 \| DRP1	collapsin response mediator protein 1	Two-hybrid	BioGRID	16169070
DDX24	-	DEAD (Asp-Glu-Ala-Asp) box polypeptide 24	Two-hybrid	BioGRID	16169070
ECH1	HPXEL	enoyl Coenzyme A hydratase 1, peroxisomal	Two-hybrid	BioGRID	16169070
EEF1A1	CCS-3 \| CCS3 \| EEF-1 \| EEF1A \| EF-Tu \| EF1A \| FLJ25721 \| GRAF-1EF \| HNGC:16303 \| LENG7 \| MGC102687 \| MGC131894 \| MGC16224 \| PTI1 \| eEF1A-1	eukaryotic translation elongation factor 1 alpha 1	Two-hybrid	BioGRID	16169070
GAPDH	G3PD \| GAPD \| MGC88685	glyceraldehyde-3-phosphate dehydrogenase	Two-hybrid	BioGRID	16169070
GBP2	-	guanylate binding protein 2, interferon-inducible	Two-hybrid	BioGRID	16169070
GDF9	-	growth differentiation factor 9	Two-hybrid	BioGRID	16169070
HSPH1	DKFZp686M05240 \| HSP105 \| HSP105A \| HSP105B \| KIAA0201 \| NY-CO-25	heat shock 105kDa/110kDa protein 1	Reconstituted Complex	BioGRID	14733918
IGSF21	FLJ41177 \| MGC15730	immunoglobin superfamily, member 21	Two-hybrid	BioGRID	16169070
LNX1	LNX \| MPDZ \| PDZRN2	ligand of numb-protein X 1	Affinity Capture-Western Two-hybrid	BioGRID	16189514
MED31	3110004H13Rik \| CGI-125 \| FLJ27436 \| FLJ36714 \| Soh1	mediator complex subunit 31	Two-hybrid	BioGRID	16169070
PAFAH1B1	LIS1 \| LIS2 \| MDCR \| MDS \| PAFAH	platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa	-	HPRD,BioGRID	10727864
PAFAH1B2	-	platelet-activating factor acetylhydrolase, isoform Ib, beta subunit 30kDa	Two-hybrid	BioGRID	16189514
PAFAH1B3	-	platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit 29kDa	Two-hybrid	BioGRID	16189514
PLEKHM1	AP162 \| B2 \| KIAA0356 \| OPTB6	pleckstrin homology domain containing, family M (with RUN domain) member 1	Two-hybrid	BioGRID	16169070
SDCBP2	FLJ12256 \| SITAC18 \| ST-2	syndecan binding protein (syntenin) 2	Two-hybrid	BioGRID	16189514
SETDB1	ESET \| KG1T \| KIAA0067 \| KMT1E	SET domain, bifurcated 1	Two-hybrid	BioGRID	16169070
TLE1	ESG \| ESG1 \| GRG1	transducin-like enhancer of split 1 (E(sp1) homolog, Drosophila)	Two-hybrid	BioGRID	16169070
TP53	FLJ92943 \| LFS1 \| TRP53 \| p53	tumor protein p53	Two-hybrid	BioGRID	16169070
TUBB2A	TUBB \| TUBB2 \| dJ40E16.7	tubulin, beta 2A	Two-hybrid	BioGRID	16169070
UNC119	HRG4	unc-119 homolog (C. elegans)	Two-hybrid	BioGRID	16169070
XRCC6	CTC75 \| CTCBF \| G22P1 \| KU70 \| ML8 \| TLAA	X-ray repair complementing defective repair in Chinese hamster cells 6	Two-hybrid	BioGRID	16169070
ZBTB16	PLZF \| ZNF145	zinc finger and BTB domain containing 16	Two-hybrid	BioGRID	16169070
ZHX1	-	zinc fingers and homeoboxes 1	Two-hybrid	BioGRID	16169070

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
KEGG_ETHER_LIPID_METABOLISM	33	15	All SZGR genes in this pathway
PID_LIS1_PATHWAY	28	22	All SZGR genes in this pathway
CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	663	425	All SZGR genes in this pathway
ENK_UV_RESPONSE_EPIDERMIS_UP	293	179	All SZGR genes in this pathway
LINDGREN_BLADDER_CANCER_CLUSTER_1_DN	378	231	All SZGR genes in this pathway
CREIGHTON_AKT1_SIGNALING_VIA_MTOR_DN	23	16	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
ROSTY_CERVICAL_CANCER_PROLIFERATION_CLUSTER	140	73	All SZGR genes in this pathway
PATIL_LIVER_CANCER	747	453	All SZGR genes in this pathway
DACOSTA_UV_RESPONSE_VIA_ERCC3_UP	309	199	All SZGR genes in this pathway
SHETH_LIVER_CANCER_VS_TXNIP_LOSS_PAM1	229	137	All SZGR genes in this pathway
PUJANA_BRCA1_PCC_NETWORK	1652	1023	All SZGR genes in this pathway
PUJANA_ATM_PCC_NETWORK	1442	892	All SZGR genes in this pathway
PUJANA_CHEK2_PCC_NETWORK	779	480	All SZGR genes in this pathway
LIAO_METASTASIS	539	324	All SZGR genes in this pathway
MORI_SMALL_PRE_BII_LYMPHOCYTE_UP	86	57	All SZGR genes in this pathway
MORI_MATURE_B_LYMPHOCYTE_DN	75	43	All SZGR genes in this pathway
YAGI_AML_FAB_MARKERS	191	131	All SZGR genes in this pathway
RHODES_CANCER_META_SIGNATURE	64	47	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_UP	428	266	All SZGR genes in this pathway
KAYO_CALORIE_RESTRICTION_MUSCLE_UP	95	64	All SZGR genes in this pathway
KYNG_DNA_DAMAGE_BY_4NQO_OR_UV	63	44	All SZGR genes in this pathway
KYNG_DNA_DAMAGE_DN	195	135	All SZGR genes in this pathway
IWANAGA_CARCINOGENESIS_BY_KRAS_UP	170	107	All SZGR genes in this pathway
WHITEFORD_PEDIATRIC_CANCER_MARKERS	116	63	All SZGR genes in this pathway
GRADE_COLON_AND_RECTAL_CANCER_UP	285	167	All SZGR genes in this pathway
BLUM_RESPONSE_TO_SALIRASIB_DN	342	220	All SZGR genes in this pathway
MUELLER_COMMON_TARGETS_OF_AML_FUSIONS_UP	14	10	All SZGR genes in this pathway
SWEET_LUNG_CANCER_KRAS_UP	491	316	All SZGR genes in this pathway
SWEET_KRAS_ONCOGENIC_SIGNATURE	89	56	All SZGR genes in this pathway
CHIANG_LIVER_CANCER_SUBCLASS_PROLIFERATION_UP	178	108	All SZGR genes in this pathway
CAIRO_LIVER_DEVELOPMENT_UP	166	105	All SZGR genes in this pathway
YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_13	172	107	All SZGR genes in this pathway
KIM_ALL_DISORDERS_OLIGODENDROCYTE_NUMBER_CORR_UP	756	494	All SZGR genes in this pathway
KIM_BIPOLAR_DISORDER_OLIGODENDROCYTE_DENSITY_CORR_UP	682	440	All SZGR genes in this pathway
KIM_ALL_DISORDERS_DURATION_CORR_DN	146	90	All SZGR genes in this pathway
VERHAAK_GLIOBLASTOMA_PRONEURAL	177	132	All SZGR genes in this pathway
QI_HYPOXIA	140	96	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_UP	570	339	All SZGR genes in this pathway
ALFANO_MYC_TARGETS	239	156	All SZGR genes in this pathway
LIM_MAMMARY_STEM_CELL_DN	428	246	All SZGR genes in this pathway