Gene Page: TRAPPC4

Summary
GeneID  51399
Symbol  TRAPPC4
Synonyms  CGI-104|HSPC172|PTD009|SBDN|SYNBINDIN|TRS23
Description  trafficking protein particle complex 4
See related  HGNC:19943|MIM:610971|Ensembl:ENSG00000196655|HPRD:18220|
Locus tag  -
Gene type  protein-coding
Map location  11q23.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.006 
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 3 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
Top 10 negatively co-expressed genes
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005515protein bindingISS11018053 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0016358dendrite developmentISSneurite, dendrite (GO term level: 11)11018053 
GO:0006888ER to Golgi vesicle-mediated transportIEA-
GO:0016192vesicle-mediated transportIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0008021synaptic vesicleISSSynap, Neurotransmitter (GO term level: 12)11018053 
GO:0030425dendriteISSneuron, axon, dendrite (GO term level: 6)11018053 
GO:0045202synapseISSneuron, Synap, Neurotransmitter, Glial (GO term level: 2)11018053 
GO:0005794Golgi apparatusIEA-
GO:0005795Golgi stackISS11018053 
GO:0005801cis-Golgi networkIEA-
GO:0005783endoplasmic reticulumIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
PRSS23MGC5107 | SIG13 | SPUVE | ZSIG13protease, serine, 23Two-hybridBioGRID16169070 
SDC2HSPG | HSPG1 | SYND2syndecan 2-HPRD11018053 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
PID_SYNDECAN_2_PATHWAY 3327All SZGR genes in this pathway
NAKAMURA_TUMOR_ZONE_PERIPHERAL_VS_CENTRAL_UP 285181All SZGR genes in this pathway
GARY_CD5_TARGETS_DN 431263All SZGR genes in this pathway
TIEN_INTESTINE_PROBIOTICS_24HR_UP 557331All SZGR genes in this pathway
LIAO_METASTASIS 539324All SZGR genes in this pathway
SHEN_SMARCA2_TARGETS_UP 424268All SZGR genes in this pathway
ZUCCHI_METASTASIS_DN 4429All SZGR genes in this pathway
PELLICCIOTTA_HDAC_IN_ANTIGEN_PRESENTATION_UP 6440All SZGR genes in this pathway
ACEVEDO_LIVER_CANCER_UP 973570All SZGR genes in this pathway
ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP 863514All SZGR genes in this pathway
YAO_TEMPORAL_RESPONSE_TO_PROGESTERONE_CLUSTER_17 181101All SZGR genes in this pathway
MARTENS_TRETINOIN_RESPONSE_DN 841431All SZGR genes in this pathway
LEE_BMP2_TARGETS_DN 882538All SZGR genes in this pathway
PHONG_TNF_RESPONSE_VIA_P38_PARTIAL 160106All SZGR genes in this pathway
PHONG_TNF_RESPONSE_NOT_VIA_P38 337236All SZGR genes in this pathway


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