Gene Page

Home
Datasets
Search
Analysis & Tools
Documents
About SZGR
Quick search: (e.g. 207 or AKT)

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets

Gene Ranking Integration

Association Linkage Expression Literature GO_Annotation Gene Network miRNA Targets Datasets Gene Ranking

Release Site Map Support Contact us

Gene Page: LUC7L2

Summary

GeneID

51631

Symbol

LUC7L2

Synonyms

CGI-59|CGI-74|FLJ10657|LUC7B2

Description

LUC7-like 2 (S. cerevisiae)

Locus tag

Gene type

protein-coding

Map location

7q34

Gene in Data Sources

Gene set name

Method of gene set

Evidence

Info

Network

Shortest path distance of core genes in the Human protein-protein interaction network

Contribution to shortest path in PPI network: 0.0179

General Gene Expression (microarray) ?

Gene Expression in Brain Regions (new)

Top co-expressed genes in Brain Regions (new)

Gene

Pearson's Correlation

Spearman's Correlation

Top 10 positively co-expressed genes

Top 10 negatively co-expressed genes

Gene Ontology

Molecular function

GO term

Evidence

Neuro keywords

PubMed ID

GO:0005515

protein binding

IPI

17353931

GO:0008270

zinc ion binding

IEA

GO:0046872

metal ion binding

IEA

Protein-protein Interactions

Shown by network

Interactors	Aliases B	Official full name B	Experimental	Source	PubMed ID
ALB	DKFZp779N1935 \| PRO0883 \| PRO0903 \| PRO1341	albumin	Two-hybrid	BioGRID	16169070
ATRX	ATR2 \| MGC2094 \| MRXHF1 \| RAD54 \| RAD54L \| SFM1 \| SHS \| XH2 \| XNP \| ZNF-HX	alpha thalassemia/mental retardation syndrome X-linked (RAD54 homolog, S. cerevisiae)	Two-hybrid	BioGRID	16169070
C14orf139	FLJ21276	chromosome 14 open reading frame 139	Two-hybrid	BioGRID	16169070
CCDC53	CGI-116	coiled-coil domain containing 53	Two-hybrid	BioGRID	16169070
CDK5RAP2	C48 \| Cep215 \| DKFZp686B1070 \| DKFZp686D1070 \| KIAA1633 \| MCPH3	CDK5 regulatory subunit associated protein 2	Two-hybrid	BioGRID	16169070
CHD3	Mi-2a \| Mi2-ALPHA \| ZFH	chromodomain helicase DNA binding protein 3	Two-hybrid	BioGRID	16169070
FAM173A	C16orf24 \| MGC2494	family with sequence similarity 173, member A	Two-hybrid	BioGRID	16169070
FXR1	-	fragile X mental retardation, autosomal homolog 1	Two-hybrid	BioGRID	16169070
GADD45G	CR6 \| DDIT2 \| GADD45gamma \| GRP17	growth arrest and DNA-damage-inducible, gamma	-	HPRD	15383276
KIAA1377	-	KIAA1377	Two-hybrid	BioGRID	16169070
KLHL20	KHLHX \| KLEIP \| KLHLX \| RP3-383J4.3	kelch-like 20 (Drosophila)	Two-hybrid	BioGRID	16169070
LPL	HDLCQ11 \| LIPD	lipoprotein lipase	Two-hybrid	BioGRID	16169070
LUC7L2	CGI-59 \| CGI-74 \| FLJ10657 \| LUC7B2	LUC7-like 2 (S. cerevisiae)	Two-hybrid	BioGRID	16169070
MAN2A2	MANA2X	mannosidase, alpha, class 2A, member 2	Two-hybrid	BioGRID	16169070
MAP1LC3B	LC3B \| MAP1A/1BLC3	microtubule-associated protein 1 light chain 3 beta	Two-hybrid	BioGRID	16169070
NAP1L5	DRLM	nucleosome assembly protein 1-like 5	Two-hybrid	BioGRID	16169070
NASP	DKFZp547F162 \| FLB7527 \| FLJ31599 \| FLJ35510 \| MGC19722 \| MGC20372 \| MGC2297 \| PRO1999	nuclear autoantigenic sperm protein (histone-binding)	Two-hybrid	BioGRID	16169070
NAT9	DKFZp564C103 \| EBSP	N-acetyltransferase 9 (GCN5-related, putative)	Two-hybrid	BioGRID	16169070
NDUFA4L2	FLJ26118 \| NUOMS	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 4-like 2	Two-hybrid	BioGRID	16169070
NKAP	FLJ22626	NFKB activating protein	Two-hybrid	BioGRID	16169070
NSF	SKD2	N-ethylmaleimide-sensitive factor	Two-hybrid	BioGRID	16169070
NUTF2	NTF2 \| PP15	nuclear transport factor 2	Two-hybrid	BioGRID	16169070
OFD1	71-7A \| CXorf5 \| MGC117039 \| MGC117040 \| SGBS2	oral-facial-digital syndrome 1	Two-hybrid	BioGRID	16169070
PEA15	HMAT1 \| HUMMAT1H \| MAT1 \| MAT1H \| PEA-15 \| PED	phosphoprotein enriched in astrocytes 15	Two-hybrid	BioGRID	16169070
PTCD3	DKFZp666K071 \| FLJ20758	Pentatricopeptide repeat domain 3	Two-hybrid	BioGRID	16169070
PTN	HARP \| HBGF8 \| HBNF \| NEGF1	pleiotrophin	Two-hybrid	BioGRID	16169070
RNPS1	E5.1 \| MGC117332	RNA binding protein S1, serine-rich domain	Affinity Capture-MS	BioGRID	17353931
SAT1	DC21 \| KFSD \| SAT \| SSAT \| SSAT-1	spermidine/spermine N1-acetyltransferase 1	Two-hybrid	BioGRID	16169070
SSFA2	CS-1 \| CS1 \| DKFZp313O1039 \| DKFZp779G0129 \| FLJ45996 \| KIAA1927 \| KRAP \| SPAG13	sperm specific antigen 2	Two-hybrid	BioGRID	16169070
SVIL	DKFZp686A17191	supervillin	Two-hybrid	BioGRID	16169070
ULK2	KIAA0623 \| Unc51.2	unc-51-like kinase 2 (C. elegans)	Two-hybrid	BioGRID	16169070
UNC119	HRG4	unc-119 homolog (C. elegans)	Two-hybrid	BioGRID	16169070
YWHAG	14-3-3GAMMA	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide	Affinity Capture-MS	BioGRID	17353931
YWHAG	14-3-3GAMMA		-	HPRD	15324660
YWHAQ	14-3-3 \| 1C5 \| HS1	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide	Affinity Capture-MS	BioGRID	17353931
ZCCHC10	FLJ20094	zinc finger, CCHC domain containing 10	Two-hybrid	BioGRID	16169070

Pathway annotation

Pathway name	Pathway size	# SZGR genes in pathway	Info
ONKEN_UVEAL_MELANOMA_UP	783	507	All SZGR genes in this pathway
CASORELLI_ACUTE_PROMYELOCYTIC_LEUKEMIA_DN	663	425	All SZGR genes in this pathway
DODD_NASOPHARYNGEAL_CARCINOMA_DN	1375	806	All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_DN	1781	1082	All SZGR genes in this pathway
GRAESSMANN_RESPONSE_TO_MC_AND_DOXORUBICIN_DN	770	415	All SZGR genes in this pathway
MARTORIATI_MDM4_TARGETS_FETAL_LIVER_UP	227	137	All SZGR genes in this pathway
GUO_HEX_TARGETS_UP	81	54	All SZGR genes in this pathway
CUI_TCF21_TARGETS_2_DN	830	547	All SZGR genes in this pathway
MARIADASON_REGULATED_BY_HISTONE_ACETYLATION_DN	54	30	All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP	1691	1088	All SZGR genes in this pathway
BOYLAN_MULTIPLE_MYELOMA_C_D_UP	139	95	All SZGR genes in this pathway
PILON_KLF1_TARGETS_UP	504	321	All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_2_DN	336	211	All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_3_DN	918	550	All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_VIA_TP53_GROUP_D	280	158	All SZGR genes in this pathway
CHANGOLKAR_H2AFY_TARGETS_DN	40	26	All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN	1080	713	All SZGR genes in this pathway

miRNA Targets ?

miRNA family	Target position			miRNA ID	miRNA seq
miRNA family	UTR start	UTR end	Match method	miRNA ID	miRNA seq
miR-124/506	904	911	1A,m8	hsa-miR-506	UAAGGCACCCUUCUGAGUAGA
miR-124/506	904	911	1A,m8	hsa-miR-124^brain	UAAGGCACGCGGUGAAUGCC
miR-320	350	356	m8	hsa-miR-320	AAAAGCUGGGUUGAGAGGGCGAA
miR-9	923	929	m8	hsa-miR-9^SZ	UCUUUGGUUAUCUAGCUGUAUGA
miR-93.hd/291-3p/294/295/302/372/373/520	724	730	m8	hsa-miR-93^brain	AAAGUGCUGUUCGUGCAGGUAG
				hsa-miR-302a	UAAGUGCUUCCAUGUUUUGGUGA
				hsa-miR-302b	UAAGUGCUUCCAUGUUUUAGUAG
				hsa-miR-302c	UAAGUGCUUCCAUGUUUCAGUGG
				hsa-miR-302d	UAAGUGCUUCCAUGUUUGAGUGU
				hsa-miR-372	AAAGUGCUGCGACAUUUGAGCGU
				hsa-miR-373	GAAGUGCUUCGAUUUUGGGGUGU
				hsa-miR-520e	AAAGUGCUUCCUUUUUGAGGG
				hsa-miR-520a	AAAGUGCUUCCCUUUGGACUGU
				hsa-miR-520b	AAAGUGCUUCCUUUUAGAGGG
				hsa-miR-520c	AAAGUGCUUCCUUUUAGAGGGUU
				hsa-miR-520d	AAAGUGCUUCUCUUUGGUGGGUU

SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.