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|
| GeneID |
56125
|
| Symbol |
PCDHB11
|
| Synonyms |
ME2|MGC138337|MGC142171|PCDH-BETA11
|
| Description |
protocadherin beta 11 |
| See related |
HGNC:8682|MIM:606337|Ensembl:ENSG00000197479|HPRD:06955| |
| Locus tag |
- |
| Gene type |
protein-coding |
| Map location |
5q31 |
|
| |
|
|
| Gene set name |
Method of gene set |
Evidence |
Info |
| GSMA_I | genome scan meta-analysis | Psr: 0.0032 | | | Literature | High-throughput literature-search | Co-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia] | Click to show detail | | GO_Annotation | Mapping neuro-related keywords to Gene Ontology annotations | Hits with neuro-related keywords: 2 | |
|
| |
| General Gene Expression (microarray) ? |
|
 |
| |
| Gene Expression in Brain Regions (new) |
|
| |
| Top co-expressed genes in Brain Regions (new) |
|
| Gene | Pearson's Correlation | Spearman's Correlation | | |
| Top 10 positively co-expressed genes |
| RHOT2 | 0.89 | 0.88 | | |
| PPAN-P2RY11 | 0.89 | 0.89 | | |
| CDK9 | 0.87 | 0.87 | | |
| ZGPAT | 0.86 | 0.87 | | |
| SH2B1 | 0.86 | 0.88 | | |
| C19orf6 | 0.86 | 0.86 | | |
| WDR24 | 0.85 | 0.83 | | |
| ACAP3 | 0.85 | 0.87 | | |
| TUBGCP6 | 0.85 | 0.88 | | |
| PPAN | 0.85 | 0.85 | | |
Top 10 negatively co-expressed genes | | AF347015.21 | -0.68 | -0.69 | | |
| AF347015.31 | -0.65 | -0.62 | | |
| AF347015.27 | -0.63 | -0.62 | | |
| MT-CO2 | -0.62 | -0.60 | | |
| AF347015.8 | -0.61 | -0.59 | | |
| GNG11 | -0.59 | -0.63 | | |
| MT-CYB | -0.59 | -0.57 | | |
| AF347015.33 | -0.58 | -0.56 | | |
| MT-ATP8 | -0.58 | -0.65 | | |
| NOSTRIN | -0.58 | -0.56 | | |
|
| Molecular function | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0005509 | calcium ion binding | IEA | | - |
| GO:0005515 | protein binding | NAS | | 11322959 |
| Biological process | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0007416 | synaptogenesis | TAS | Synap (GO term level: 6) | 12231349 |
| GO:0007268 | synaptic transmission | TAS | neuron, Synap, Neurotransmitter (GO term level: 6) | 12231349 |
| GO:0007155 | cell adhesion | TAS | | 10380929 |
| GO:0007156 | homophilic cell adhesion | IEA | | - |
| GO:0016339 | calcium-dependent cell-cell adhesion | NAS | | 9182820 |11322959 |
| Cellular component | GO term | Evidence | Neuro keywords | PubMed ID |
|---|
| GO:0016020 | membrane | NAS | | 9182820 |
| GO:0005886 | plasma membrane | IEA | | - |
| GO:0005887 | integral to plasma membrane | TAS | | 10380929 |
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