Gene Page: TAF13

Summary
GeneID  6884
Symbol  TAF13
Synonyms  MGC22425|TAF2K|TAFII18
Description  TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 18kDa
See related  HGNC:11546|MIM:600774|Ensembl:ENSG00000197780|
Locus tag  -
Gene type  protein-coding
Map location  1p13.3
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
ExpressionExpressionP value: 1.684 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
HP1BP30.970.96
ADNP0.960.96
KDM4A0.960.96
THRAP30.960.97
CNOT60.960.96
CHD80.960.96
NCOA50.960.96
MSL20.960.96
MED10.960.97
RBM160.960.97
Top 10 negatively co-expressed genes
AF347015.31-0.78-0.89
MT-CO2-0.77-0.89
IFI27-0.75-0.88
AF347015.27-0.75-0.86
C5orf53-0.75-0.76
FXYD1-0.75-0.87
AF347015.33-0.74-0.84
AIFM3-0.73-0.76
HLA-F-0.73-0.75
HIGD1B-0.73-0.88
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0003700transcription factor activityTAS9695952 
GO:0005515protein bindingIPI9695952 
GO:0016251general RNA polymerase II transcription factor activityTAS7729427 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006355regulation of transcription, DNA-dependentIEA-
GO:0006367transcription initiation from RNA polymerase II promoterEXP8946909 
GO:0006368RNA elongation from RNA polymerase II promoterEXP9405375 
GO:0006350transcriptionIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusIEA-
GO:0005654nucleoplasmEXP1939271 |2449431 |8946909 
GO:0005669transcription factor TFIID complexTAS7729427 
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
CPSF1CPSF160 | HSU37012 | P/cl.18cleavage and polyadenylation specific factor 1, 160kDain vitroBioGRID9311784 
TAF10TAF2A | TAF2H | TAFII30TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 30kDa-HPRD,BioGRID7729427 
TAF11MGC:15243 | PRO2134 | TAF2I | TAFII28TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa-HPRD,BioGRID7729427 |9695952 
TAF15Npl3 | RBP56 | TAF2N | TAFII68 | hTAFII68TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 68kDaAffinity Capture-Western
Reconstituted Complex		BioGRID9488465 
TBPGTF2D | GTF2D1 | MGC117320 | MGC126054 | MGC126055 | SCA17 | TFIIDTATA box binding protein-HPRD,BioGRID7729427 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
KEGG_BASAL_TRANSCRIPTION_FACTORS 3624All SZGR genes in this pathway
REACTOME_RNA_POL_II_TRANSCRIPTION 10554All SZGR genes in this pathway
REACTOME_RNA_POL_II_TRANSCRIPTION_PRE_INITIATION_AND_PROMOTER_OPENING 4121All SZGR genes in this pathway
REACTOME_TRANSCRIPTION 210127All SZGR genes in this pathway
REACTOME_RNA_POL_II_PRE_TRANSCRIPTION_EVENTS 6132All SZGR genes in this pathway
REACTOME_HIV_INFECTION 207122All SZGR genes in this pathway
REACTOME_HIV_LIFE_CYCLE 12569All SZGR genes in this pathway
REACTOME_LATE_PHASE_OF_HIV_LIFE_CYCLE 10461All SZGR genes in this pathway
CONCANNON_APOPTOSIS_BY_EPOXOMICIN_UP 239157All SZGR genes in this pathway
GRAESSMANN_APOPTOSIS_BY_DOXORUBICIN_UP 1142669All SZGR genes in this pathway
MANTOVANI_VIRAL_GPCR_SIGNALING_DN 4937All SZGR genes in this pathway
WEI_MYCN_TARGETS_WITH_E_BOX 795478All SZGR genes in this pathway
HOFMANN_CELL_LYMPHOMA_UP 5035All SZGR genes in this pathway
IVANOVA_HEMATOPOIESIS_EARLY_PROGENITOR 532309All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_16HR_UP 225139All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_10HR_UP 10169All SZGR genes in this pathway
CAMPS_COLON_CANCER_COPY_NUMBER_DN 7434All SZGR genes in this pathway
MILI_PSEUDOPODIA_HAPTOTAXIS_UP 518299All SZGR genes in this pathway
BROWNE_HCMV_INFECTION_30MIN_DN 15099All SZGR genes in this pathway
GOBERT_OLIGODENDROCYTE_DIFFERENTIATION_DN 1080713All SZGR genes in this pathway


Copyright © Bioinformatics and Systems Medicine Laboratory All Rights Reserved since 2009.