Gene Page: SNAP29

Summary
GeneID  9342
Symbol  SNAP29
Synonyms  CEDNIK|FLJ21051|SNAP-29
Description  synaptosomal-associated protein, 29kDa
See related  HGNC:11133|MIM:604202|Ensembl:ENSG00000099940|HPRD:11968|
Locus tag  -
Gene type  protein-coding
Map location  22q11.21
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
AssociationA combined odds ratio method (Sun et al. 2008), association studies2Link to SZGene
GSMA_Igenome scan meta-analysisPsr: 0.031 
LiteratureHigh-throughput literature-searchCo-occurance with Schizophrenia keywords: [schizophrenias, schizophrenia]Click to show detail
GO_AnnotationMapping neuro-related keywords to Gene Ontology annotationsHits with neuro-related keywords: 1 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
MRPL210.860.82
MRPL220.840.77
SUCLG10.840.83
HBXIP0.840.80
NDUFA120.830.83
PSMA60.820.79
ATP5O0.820.84
HAX10.820.79
RBX10.820.82
GTF3A0.810.76
Top 10 negatively co-expressed genes
MYH9-0.50-0.49
TENC1-0.47-0.55
SEMA3G-0.47-0.51
PEAR1-0.46-0.51
DOCK6-0.46-0.52
FAM38A-0.45-0.53
MMRN2-0.45-0.46
MTSS1L-0.45-0.49
ENG-0.45-0.49
GPR124-0.44-0.49
Gene Ontology
Molecular functionGO termEvidenceNeuro keywordsPubMed ID
GO:0005484SNAP receptor activityTAS10839363 
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006944membrane fusionTAS10839363 
GO:0006903vesicle targetingTAS9852078 
GO:0006887exocytosisTAS10839363 
GO:0015031protein transportIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0019717synaptosomeIEASynap, Brain (GO term level: 7)-
GO:0045202synapseIEAneuron, Synap, Neurotransmitter, Glial (GO term level: 2)-
GO:0005737cytoplasmIEA-
GO:0005886plasma membraneTAS9852078 
GO:0030054cell junctionIEA-
 
Protein-protein InteractionsShown by network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
AP2A1ADTAA | AP2-ALPHA | CLAPA1adaptor-related protein complex 2, alpha 1 subunit-HPRD11423532 
C1orf190FLJ25163chromosome 1 open reading frame 190Two-hybridBioGRID16189514 
CD7GP40 | LEU-9 | TP41 | Tp40CD7 molecule-HPRD9852078 |11423532 
EHD1FLJ42622 | FLJ44618 | H-PAST | HPAST1 | PAST | PAST1EH-domain containing 1EHD1 interacts with SNAP29.BIND11423532 
-HPRD,BioGRID11423532 
EHD3PAST3EH-domain containing 3EHD3 interacts with SNAP29. This interaction was modeled on a demonstrated interaction between mouse EHD3 and human SNAP29.BIND11423532 
Two-hybridBioGRID11423532 
ESR1DKFZp686N23123 | ER | ESR | ESRA | Era | NR3A1estrogen receptor 1ER interacts with SNAP29.BIND16009131 
IGF1RCD221 | IGFIR | JTK13 | MGC142170 | MGC142172 | MGC18216insulin-like growth factor 1 receptor-HPRD,BioGRID11423532 
SNAP29CEDNIK | FLJ21051 | SNAP-29synaptosomal-associated protein, 29kDaSNAP29 homodimerzes.BIND11423532 
Two-hybridBioGRID11423532 
STX12MGC51957 | STX13 | STX14syntaxin 12-HPRD,BioGRID9852078 
STX17FLJ20651 | MGC102796 | MGC126613 | MGC126615syntaxin 17-HPRD,BioGRID9852078 
STX1AHPC-1 | STX1 | p35-1syntaxin 1A (brain)-HPRD,BioGRID9852078 
STX3STX3Asyntaxin 3-HPRD,BioGRID9852078 
STX4STX4A | p35-2syntaxin 4Reconstituted ComplexBioGRID9852078 
STX6-syntaxin 6-HPRD9880331 |11423532 
STX7-syntaxin 7-HPRD,BioGRID9852078 |11423532 
VAMP7SYBL1 | TI-VAMP | VAMP-7vesicle-associated membrane protein 7-HPRD,BioGRID12853575 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
KEGG_SNARE_INTERACTIONS_IN_VESICULAR_TRANSPORT 3825All SZGR genes in this pathway
GOZGIT_ESR1_TARGETS_DN 781465All SZGR genes in this pathway
SPIELMAN_LYMPHOBLAST_EUROPEAN_VS_ASIAN_UP 479299All SZGR genes in this pathway
LOCKWOOD_AMPLIFIED_IN_LUNG_CANCER 214139All SZGR genes in this pathway
DING_LUNG_CANCER_EXPRESSION_BY_COPY_NUMBER 10062All SZGR genes in this pathway
MASSARWEH_TAMOXIFEN_RESISTANCE_UP 578341All SZGR genes in this pathway
ACEVEDO_LIVER_TUMOR_VS_NORMAL_ADJACENT_TISSUE_UP 863514All SZGR genes in this pathway
BONOME_OVARIAN_CANCER_SURVIVAL_OPTIMAL_DEBULKING 246152All SZGR genes in this pathway
JOHNSTONE_PARVB_TARGETS_2_UP 14094All SZGR genes in this pathway
BRUINS_UVC_RESPONSE_LATE 1137655All SZGR genes in this pathway
PEDRIOLI_MIR31_TARGETS_DN 418245All SZGR genes in this pathway
LIM_MAMMARY_STEM_CELL_DN 428246All SZGR genes in this pathway


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