Gene Page: VGLL4

Summary
GeneID  9686
Symbol  VGLL4
Synonyms  KIAA0121|VGL-4
Description  vestigial like 4 (Drosophila)
See related  HGNC:28966|Ensembl:ENSG00000144560|HPRD:11672|
Locus tag  -
Gene type  protein-coding
Map location  3p25.2
 
Gene in Data Sources
Gene set name Method of gene set Evidence Info
GSMA_Igenome scan meta-analysisPsr: 0.006 
 
General Gene Expression (microarray) ?
 
Gene Expression in Brain Regions (new)
 
Top co-expressed genes in Brain Regions (new)
GenePearson's Correlation Spearman's Correlation
Top 10 positively co-expressed genes
ZFYVE210.670.71
TAP20.660.69
C14orf1590.640.70
HS1BP30.640.69
OAS30.630.67
TRIM250.630.72
GRIK40.630.70
RETSAT0.620.67
PYCR20.620.70
C10orf720.610.62
Top 10 negatively co-expressed genes
RBMX2-0.38-0.44
FAM159B-0.37-0.47
RP9P-0.36-0.46
C21orf57-0.36-0.39
HDAC2-0.35-0.17
SNRPG-0.34-0.41
H2AFY2-0.33-0.12
RPL35A-0.33-0.42
RPS3AP47-0.33-0.33
ZNF738-0.33-0.20
Gene Ontology
Biological processGO termEvidenceNeuro keywordsPubMed ID
GO:0006355regulation of transcription, DNA-dependentIEA-
GO:0006350transcriptionIEA-
Cellular componentGO termEvidenceNeuro keywordsPubMed ID
GO:0005634nucleusIEA-
 
InteractionsShown by Network
InteractorsAliases BOfficial full name BExperimentalSourcePubMed ID
MEF2AADCAD1 | RSRFC4 | RSRFC9myocyte enhancer factor 2ATwo-hybridBioGRID15140898 
MEF2C-myocyte enhancer factor 2C-HPRD15140898 
TEAD1AA | REF1 | TCF13 | TEF-1TEA domain family member 1 (SV40 transcriptional enhancer factor)-HPRD,BioGRID15140898 
 
Pathway annotation
Pathway namePathway size# SZGR genes in pathwayInfo
ZHOU_INFLAMMATORY_RESPONSE_LIVE_DN 384220All SZGR genes in this pathway
WANG_LMO4_TARGETS_UP 372227All SZGR genes in this pathway
GARGALOVIC_RESPONSE_TO_OXIDIZED_PHOSPHOLIPIDS_RED_DN 2519All SZGR genes in this pathway
MULLIGHAN_MLL_SIGNATURE_2_DN 281186All SZGR genes in this pathway
ZHOU_INFLAMMATORY_RESPONSE_FIMA_DN 284156All SZGR genes in this pathway
KINSEY_TARGETS_OF_EWSR1_FLII_FUSION_DN 329219All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_POORLY_DIFFERENTIATED_DN 805505All SZGR genes in this pathway
RODRIGUES_THYROID_CARCINOMA_ANAPLASTIC_DN 537339All SZGR genes in this pathway
PROVENZANI_METASTASIS_UP 194112All SZGR genes in this pathway
LASTOWSKA_NEUROBLASTOMA_COPY_NUMBER_DN 800473All SZGR genes in this pathway
DAIRKEE_TERT_TARGETS_UP 380213All SZGR genes in this pathway
NUYTTEN_NIPP1_TARGETS_UP 769437All SZGR genes in this pathway
NUYTTEN_EZH2_TARGETS_UP 1037673All SZGR genes in this pathway
LIAO_HAVE_SOX4_BINDING_SITES 4026All SZGR genes in this pathway
LIAO_METASTASIS 539324All SZGR genes in this pathway
BENPORATH_ES_CORE_NINE_CORRELATED 10068All SZGR genes in this pathway
HOEGERKORP_CD44_TARGETS_TEMPORAL_UP 138All SZGR genes in this pathway
BLALOCK_ALZHEIMERS_DISEASE_UP 16911088All SZGR genes in this pathway
SESTO_RESPONSE_TO_UV_C5 4636All SZGR genes in this pathway
ZHENG_BOUND_BY_FOXP3 491310All SZGR genes in this pathway
RUIZ_TNC_TARGETS_UP 153107All SZGR genes in this pathway
MIKKELSEN_NPC_ICP_WITH_H3K4ME3 445257All SZGR genes in this pathway
SMIRNOV_RESPONSE_TO_IR_2HR_DN 5535All SZGR genes in this pathway
SMIRNOV_RESPONSE_TO_IR_6HR_DN 11469All SZGR genes in this pathway
miRNA Targets ?
miRNA familyTarget positionmiRNA IDmiRNA seq
UTR startUTR endMatch method
miR-1/20612761282m8hsa-miR-1UGGAAUGUAAAGAAGUAUGUA
hsa-miR-206SZUGGAAUGUAAGGAAGUGUGUGG
hsa-miR-613AGGAAUGUUCCUUCUUUGCC
miR-124.1245424601Ahsa-miR-124aUUAAGGCACGCGGUGAAUGCCA
miR-130/3014784851A,m8hsa-miR-130abrainCAGUGCAAUGUUAAAAGGGCAU
hsa-miR-301CAGUGCAAUAGUAUUGUCAAAGC
hsa-miR-130bbrainCAGUGCAAUGAUGAAAGGGCAU
hsa-miR-454-3pUAGUGCAAUAUUGCUUAUAGGGUUU
miR-1343243311A,m8hsa-miR-134brainUGUGACUGGUUGACCAGAGGG
miR-135331337m8hsa-miR-135aUAUGGCUUUUUAUUCCUAUGUGA
hsa-miR-135bUAUGGCUUUUCAUUCCUAUGUG
miR-181181918251Ahsa-miR-181abrainAACAUUCAACGCUGUCGGUGAGU
hsa-miR-181bSZAACAUUCAUUGCUGUCGGUGGG
hsa-miR-181cbrainAACAUUCAACCUGUCGGUGAGU
hsa-miR-181dbrainAACAUUCAUUGUUGUCGGUGGGUU
miR-19477483m8hsa-miR-19aUGUGCAAAUCUAUGCAAAACUGA
hsa-miR-19bUGUGCAAAUCCAUGCAAAACUGA
miR-221/22218741880m8hsa-miR-221brainAGCUACAUUGUCUGCUGGGUUUC
hsa-miR-222brainAGCUACAUCUGGCUACUGGGUCUC
miR-328126112671Ahsa-miR-328brainCUGGCCCUCUCUGCCCUUCCGU
miR-33048541Ahsa-miR-330brainGCAAAGCACACGGCCUGCAGAGA
miR-365732738m8hsa-miR-365UAAUGCCCCUAAAAAUCCUUAU
miR-384175117571Ahsa-miR-384AUUCCUAGAAAUUGUUCAUA
miR-48821952201m8hsa-miR-488CCCAGAUAAUGGCACUCUCAA
miR-493-5p18211827m8hsa-miR-493-5pUUGUACAUGGUAGGCUUUCAUU
miR-495186218681Ahsa-miR-495brainAAACAAACAUGGUGCACUUCUUU
miR-5393193251Ahsa-miR-539GGAGAAAUUAUCCUUGGUGUGU
miR-92612681A,m8hsa-miR-9SZUCUUUGGUUAUCUAGCUGUAUGA
  • SZ: miRNAs which differentially expressed in brain cortex of schizophrenia patients comparing with control samples using microarray. Click here to see the list of SZ related miRNAs.
  • Brain: miRNAs which are expressed in brain based on miRNA microarray expression studies. Click here to see the list of brain related miRNAs.


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