Pulmonary Arterial Hypertension KnowledgeBase (bioinfom_tsdb)
bioinfom_tsdb
Pulmonary Arterial Hypertension KnowledgeBase
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

3172

Name

HNF4A

Synonymous

hepatocyte nuclear factor 4, alpha;HNF4A;hepatocyte nuclear factor 4, alpha

Definition

HNF4alpha10/11/12|TCF-14|hepatic nuclear factor 4 alpha|hepatocyte nuclear factor 4-alpha|nuclear receptor subfamily 2 group A member 1|transcription factor 14|transcription factor HNF-4

Position

20q13.12

Gene Type

protein-coding

Mutation summary:

Mutations in domains
Mutational pattern in 17 major cancer types
LoF vs missense mutations
All the copy number variations from COSMIC database V72
All the mutations from COSMIC database V72

Mutation summary in protein domains

Top

We used uniprot protein structure data from ensemble BioMart database. The size of circle shows the relative mutation number.

The non-synonymous (top) and synonymous (bottom) mutational percentage for various cancers

Top

The non-synonymous mutational pattern in 17 major cancer types.
The synonymous mutational pattern in 17 major cancer types.

Loss of Function mutations compare to missense mutations

Top

Loss of Function mutations compare to missense mutation.
The ratio of the loss-of-function mutations over missense mutations is 0.07.

The copy number variations for various cancers

Top

The copy number variations in 17 major cancer groups: 1; Breast, 2; Central nervous system, 3; Cervix, 4; Endometrium, 5; Haematopoietic and lymphoid_tissue, 6; Kidney, 7; Large intestine, 8; Liver, 9; Lung, 10; NS, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary tract

The copy number variations in 17 major cancer types: 1; Breast, 2; Central nervous system, 3; Cervix, 4; Endometrium, 5; Haematopoietic and lymphoid_tissue, 6; Kidney, 7; Large intestine, 8; Liver, 9; Lung, 10; Not specific, 11; Ovary, 12; Pancreas, 13; Prostate, 14; Skin, 15; Stomach, 16; Thyroid, 17; Urinary tract

COSMIC somatic mutation [Top]

Mutation (CDS; AA; Chr)

Site

Histology

Mutation Type

c.989C>G; p.S330W; 20:44424114-44424114

upper_aerodigestive_tract; mouthcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.1309C>T; p.P437S; 20:44429549-44429549

skinmalignant_melanomaSubstitution - Missense

c.375G>A; p.M125I; 20:44407465-44407465

livercarcinomaSubstitution - Missense

c.192G>A; p.G64G; 20:44406134-44406134

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.989C>G; p.S330W; 20:44424114-44424114

upper_aerodigestive_tract; mouthcarcinomaSubstitution - Missense

c.189C>T; p.C63C; 20:44406131-44406131

endometriumcarcinoma; endometrioid_carcinomaSubstitution - coding silent

c.234C>T; p.D78D; 20:44406176-44406176

stomachcarcinoma; adenocarcinomaSubstitution - coding silent

c.1300C>T; p.Q434*; 20:44429540-44429540

thyroidother; neoplasmSubstitution - Nonsense

c.1178T>C; p.L393P; 20:44428383-44428383

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.493-1G>A; p.?; 20:44414506-44414506

skin; head_neckcarcinoma; squamous_cell_carcinomaUnknown

c.1178T>C; p.L393P; 20:44428383-44428383

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.601T>A; p.W201R; 20:44414615-44414615

thyroidcarcinomaSubstitution - Missense

c.991C>G; p.R331G; 20:44424116-44424116

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.191G>T; p.G64V; 20:44406133-44406133

lung; left_upper_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.148G>A; p.A50T; 20:44406090-44406090

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.281A>G; p.Y94C; 20:44406223-44406223

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.303G>T; p.Q101H; 20:44407393-44407393

kidneycarcinoma; clear_cell_renal_cell_carcinomaSubstitution - Missense

c.915A>C; p.P305P; 20:44424040-44424040

skinmalignant_melanomaSubstitution - coding silent

c.104C>A; p.T35K; 20:44401476-44401476

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.915A>C; p.P305P; 20:44424040-44424040

skinmalignant_melanomaSubstitution - coding silent

c.882C>A; p.F294L; 20:44419866-44419866

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.882C>A; p.F294L; 20:44419866-44419866

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.1223T>C; p.M408T; 20:44428428-44428428

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.473C>T; p.A158V; 20:44413781-44413781

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.473C>T; p.A158V; 20:44413781-44413781

oesophagus; lower_thirdcarcinoma; adenocarcinomaSubstitution - Missense

c.1066C>T; p.Q356*; 20:44424191-44424191

skinmalignant_melanomaSubstitution - Nonsense

c.1273G>A; p.G425R; 20:44428478-44428478

skinmalignant_melanomaSubstitution - Missense

c.1243G>A; p.G415R; 20:44428448-44428448

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.1243G>A; p.G415R; 20:44428448-44428448

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.129A>G; p.S43S; 20:44406071-44406071

skinmalignant_melanomaSubstitution - coding silent

c.177G>C; p.L59L; 20:44406119-44406119

lungcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.203C>T; p.T68M; 20:44406145-44406145

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.1138A>G; p.S380G; 20:44428343-44428343

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.843C>T; p.I281I; 20:44419827-44419827

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.520G>A; p.G174S; 20:44414534-44414534

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.204G>A; p.T68T; 20:44406146-44406146

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.1159C>T; p.H387Y; 20:44428364-44428364

central_nervous_system; brainglioma; astrocytoma_Grade_IVSubstitution - Missense

c.1357G>A; p.V453I; 20:44429597-44429597

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.100T>A; p.L34M; 20:44401472-44401472

skinmalignant_melanomaSubstitution - Missense

c.403G>A; p.D135N; 20:44413711-44413711

skinmalignant_melanomaSubstitution - Missense

c.273C>A; p.N91K; 20:44406215-44406215

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.333G>T; p.Q111H; 20:44407423-44407423

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.333G>T; p.Q111H; 20:44407423-44407423

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.333G>T; p.Q111H; 20:44407423-44407423

large_intestine; coloncarcinomaSubstitution - Missense

c.333G>T; p.Q111H; 20:44407423-44407423

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.637C>A; p.L213M; 20:44414651-44414651

lung; right_lower_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.483G>C; p.L161L; 20:44413791-44413791

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.1022_1024delTGC; p.L341delL; 20:44424147-44424149

haematopoietic_and_lymphoid_tissuelymphoid_neoplasm; mantle_cell_lymphomaDeletion - In frame

c.977G>A; p.R326H; 20:44424102-44424102

central_nervous_system; brainglioma; astrocytoma_Grade_IVSubstitution - Missense

c.1022_1024delTGC; p.L341delL; 20:44424147-44424149

haematopoietic_and_lymphoid_tissuelymphoid_neoplasm; hairy_cell_leukaemiaDeletion - In frame

c.1199C>T; p.T400I; 20:44428404-44428404

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.1297C>A; p.P433T; 20:44429537-44429537

thyroidother; neoplasmSubstitution - Missense

c.1215C>A; p.A405A; 20:44428420-44428420

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.274C>A; p.H92N; 20:44406216-44406216

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.940C>T; p.Q314*; 20:44424065-44424065

skinmalignant_melanomaSubstitution - Nonsense

c.408G>A; p.R136R; 20:44413716-44413716

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.1182G>A; p.M394I; 20:44428387-44428387

skinmalignant_melanomaSubstitution - Missense

c.1182G>A; p.M394I; 20:44428387-44428387

skinmalignant_melanomaSubstitution - Missense

c.909C>T; p.S303S; 20:44424034-44424034

endometriumcarcinoma; endometrioid_carcinomaSubstitution - coding silent

c.143T>G; p.L48R; 20:44406085-44406085

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.160C>A; p.L54M; 20:44406102-44406102

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.444C>T; p.S148S; 20:44413752-44413752

skinmalignant_melanomaSubstitution - coding silent

c.1057G>A; p.E353K; 20:44424182-44424182

skinmalignant_melanomaSubstitution - Missense

c.966C>T; p.Y322Y; 20:44424091-44424091

breastcarcinomaSubstitution - coding silent

c.1022T>C; p.L341P; 20:44424147-44424147

livercarcinoma; hepatocellular_carcinomaSubstitution - Missense

c.869A>C; p.K290T; 20:44419853-44419853

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.280T>C; p.Y94H; 20:44406222-44406222

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.172G>A; p.A58T; 20:44406114-44406114

stomachcarcinoma; adenocarcinomaSubstitution - Missense

c.1424A>G; p.*475W; 20:44429664-44429664

oesophaguscarcinoma; adenocarcinomaNonstop extension

c.523G>A; p.D175N; 20:44414537-44414537

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1297C>T; p.P433S; 20:44429537-44429537

skinmalignant_melanomaSubstitution - Missense

c.1083C>T; p.F361F; 20:44424208-44424208

skinmalignant_melanomaSubstitution - coding silent

c.1283-2A>T; p.?; 20:44429521-44429521

large_intestine; coloncarcinoma; adenocarcinomaUnknown

c.25G>A; p.D9N; 20:44401397-44401397

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.387C>T; p.A129A; 20:44413695-44413695

pancreascarcinomaSubstitution - coding silent

c.56T>C; p.L19P; 20:44401428-44401428

large_intestine; caecumcarcinoma; adenocarcinomaSubstitution - Missense

c.529C>T; p.R177W; 20:44414543-44414543

skinmalignant_melanomaSubstitution - Missense

c.387C>T; p.A129A; 20:44413695-44413695

pancreascarcinomaSubstitution - coding silent

c.387C>T; p.A129A; 20:44413695-44413695

pancreascarcinoma; ductal_carcinomaSubstitution - coding silent

c.685_686delCT; p.L229fs*19; 20:44418461-44418462

livercarcinomaDeletion - Frameshift

c.1204G>C; p.V402L; 20:44428409-44428409

lungcarcinoma; small_cell_carcinomaSubstitution - Missense

c.181G>C; p.A61P; 20:44406123-44406123

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.1179G>A; p.L393L; 20:44428384-44428384

ovarycarcinoma; serous_carcinomaSubstitution - coding silent

c.1204G>C; p.V402L; 20:44428409-44428409

lungcarcinoma; small_cell_carcinomaSubstitution - Missense

c.1414G>A; p.E472K; 20:44429654-44429654

skinmalignant_melanomaSubstitution - Missense

c.1414G>A; p.E472K; 20:44429654-44429654

skinmalignant_melanomaSubstitution - Missense

c.345C>G; p.C115W; 20:44407435-44407435

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1126G>A; p.G376R; 20:44424251-44424251

skinmalignant_melanomaSubstitution - Missense

c.388G>A; p.V130I; 20:44413696-44413696

large_intestinecarcinoma; adenocarcinomaSubstitution - Missense

c.418C>T; p.R140*; 20:44413726-44413726

central_nervous_system; brainglioma; astrocytoma_Grade_IVSubstitution - Nonsense

c.1265G>A; p.R422Q; 20:44428470-44428470

skinmalignant_melanomaSubstitution - Missense

c.1251G>A; p.M417I; 20:44428456-44428456

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.844G>A; p.D282N; 20:44419828-44419828

skinmalignant_melanomaSubstitution - Missense

c.262G>T; p.V88L; 20:44406204-44406204

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.147C>T; p.N49N; 20:44406089-44406089

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - coding silent

c.912T>A; p.D304E; 20:44424037-44424037

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.2T>C; p.M1T; 20:44401374-44401374

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.1355C>A; p.A452D; 20:44429595-44429595

lungcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.632T>C; p.L211P; 20:44414646-44414646

skin; mucosalmalignant_melanomaSubstitution - Missense

c.173_174CC>TT; p.A58V; 20:44406115-44406116

skinmalignant_melanomaSubstitution - Missense

c.939C>T; p.S313S; 20:44424064-44424064

skinmalignant_melanomaSubstitution - coding silent

c.580C>T; p.Q194*; 20:44414594-44414594

pancreascarcinomaSubstitution - Nonsense

c.1295C>T; p.T432I; 20:44429535-44429535

skinmalignant_melanomaSubstitution - Missense

c.253C>T; p.R85W; 20:44406195-44406195

livercarcinoma; hepatocellular_carcinomaSubstitution - Missense

c.1086C>T; p.G362G; 20:44424211-44424211

oesophagus; lower_thirdcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.337C>G; p.R113G; 20:44407427-44407427

breastcarcinomaSubstitution - Missense

c.236G>C; p.G79A; 20:44406178-44406178

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.192_193GG>AA; p.D65N; 20:44406134-44406135

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.102G>A; p.L34L; 20:44401474-44401474

urinary_tract; bladdercarcinomaSubstitution - coding silent

c.368C>T; p.A123V; 20:44407458-44407458

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.677A>T; p.E226V; 20:44418453-44418453

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.116-2A>G; p.?; 20:44406056-44406056

pancreascarcinoid-endocrine_tumourUnknown

c.252C>T; p.F84F; 20:44406194-44406194

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - coding silent

c.1139G>A; p.S380N; 20:44428344-44428344

skinmalignant_melanomaSubstitution - Missense

c.788G>A; p.R263Q; 20:44419772-44419772

central_nervous_system; brainglioma; astrocytoma_Grade_IVSubstitution - Missense

c.1244G>A; p.G415E; 20:44428449-44428449

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.989C>T; p.S330L; 20:44424114-44424114

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1244G>A; p.G415E; 20:44428449-44428449

skinmalignant_melanomaSubstitution - Missense

c.73A>T; p.T25S; 20:44401445-44401445

stomachcarcinoma; intestinal_adenocarcinomaSubstitution - Missense

c.1274G>A; p.G425E; 20:44428479-44428479

skin; extremitymalignant_melanomaSubstitution - Missense

c.152C>G; p.P51R; 20:44406094-44406094

ovarycarcinoma; serous_carcinomaSubstitution - Missense

c.487C>G; p.R163G; 20:44413795-44413795

biliary_tract; gallbladdercarcinoma; adenocarcinomaSubstitution - Missense

c.146A>T; p.N49I; 20:44406088-44406088

lungcarcinomaSubstitution - Missense

c.249C>T; p.F83F; 20:44406191-44406191

skinmalignant_melanomaSubstitution - coding silent

c.388G>C; p.V130L; 20:44413696-44413696

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.146A>T; p.N49I; 20:44406088-44406088

lungcarcinomaSubstitution - Missense

c.575A>C; p.K192T; 20:44414589-44414589

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.319G>T; p.D107Y; 20:44407409-44407409

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.216C>T; p.Y72Y; 20:44406158-44406158

central_nervous_system; brainglioma; astrocytoma_Grade_IVSubstitution - coding silent

c.80A>C; p.E27A; 20:44401452-44401452

kidneycarcinoma; clear_cell_renal_cell_carcinomaSubstitution - Missense

c.1264C>T; p.R422*; 20:44428469-44428469

stomachcarcinoma; adenocarcinomaSubstitution - Nonsense

c.598G>A; p.E200K; 20:44414612-44414612

urinary_tract; bladdercarcinomaSubstitution - Missense

c.1272G>A; p.R424R; 20:44428477-44428477

skinmalignant_melanomaSubstitution - coding silent

c.1375C>A; p.P459T; 20:44429615-44429615

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.800G>A; p.R267H; 20:44419784-44419784

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.573G>A; p.M191I; 20:44414587-44414587

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.454A>T; p.I152F; 20:44413762-44413762

breastcarcinomaSubstitution - Missense

c.382G>A; p.E128K; 20:44407472-44407472

skinmalignant_melanomaSubstitution - Missense

c.492G>T; p.Q164H; 20:44413800-44413800

lungcarcinoma; adenocarcinomaSubstitution - Missense

c.1142A>T; p.D381V; 20:44428347-44428347

thyroidcarcinomaSubstitution - Missense

c.1422C>A; p.I474I; 20:44429662-44429662

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - coding silent

c.768G>A; p.P256P; 20:44419752-44419752

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - coding silent

c.961G>A; p.D321N; 20:44424086-44424086

skinmalignant_melanomaSubstitution - Missense

c.1302G>A; p.Q434Q; 20:44429542-44429542

skinmalignant_melanomaSubstitution - coding silent

c.1242C>T; p.N414N; 20:44428447-44428447

skinmalignant_melanomaSubstitution - coding silent

c.461C>T; p.A154V; 20:44413769-44413769

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.1141G>A; p.D381N; 20:44428346-44428346

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense

c.1325G>A; p.G442E; 20:44429565-44429565

skinmalignant_melanomaSubstitution - Missense

c.595G>A; p.V199I; 20:44414609-44414609

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.1252T>A; p.C418S; 20:44428457-44428457

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.1252T>A; p.C418S; 20:44428457-44428457

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.1209C>T; p.I403I; 20:44428414-44428414

endometriumcarcinoma; endometrioid_carcinomaSubstitution - coding silent

c.1225C>T; p.P409S; 20:44428430-44428430

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.533C>T; p.A178V; 20:44414547-44414547

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.692G>A; p.G231E; 20:44418468-44418468

skinmalignant_melanomaSubstitution - Missense

c.490C>T; p.Q164*; 20:44413798-44413798

livercarcinomaSubstitution - Nonsense

c.372C>T; p.G124G; 20:44407462-44407462

endometriumcarcinoma; endometrioid_carcinomaSubstitution - coding silent

c.173C>T; p.A58V; 20:44406115-44406115

lung; right_upper_lobecarcinoma; adenocarcinomaSubstitution - Missense

c.724G>A; p.V242M; 20:44418500-44418500

large_intestine; coloncarcinoma; adenocarcinomaSubstitution - Missense

c.1314A>T; p.P438P; 20:44429554-44429554

lungcarcinoma; adenocarcinomaSubstitution - coding silent

c.435G>A; p.E145E; 20:44413743-44413743

skinmalignant_melanomaSubstitution - coding silent

c.378G>A; p.K126K; 20:44407468-44407468

breastcarcinomaSubstitution - coding silent

c.1315G>T; p.G439C; 20:44429555-44429555

large_intestine; rectumcarcinoma; adenocarcinomaSubstitution - Missense

c.1234C>T; p.L412F; 20:44428439-44428439

endometriumcarcinoma; endometrioid_carcinomaSubstitution - Missense

c.910G>A; p.D304N; 20:44424035-44424035

skinmalignant_melanomaSubstitution - Missense

c.1234C>T; p.L412F; 20:44428439-44428439

skin; head_neckcarcinoma; squamous_cell_carcinomaSubstitution - Missense


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