Pulmonary Arterial Hypertension KnowledgeBase (bioinfom_tsdb)
bioinfom_tsdb
Pulmonary Arterial Hypertension KnowledgeBase
General information | Literature | Expression | Regulation | Variant | Interaction

Basic Information

Gene ID

6599

Name

SMARCC1

Synonymous

BAF155|CRACC1|Rsc8|SRG3|SWI3;SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1;SMARCC1;SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1

Definition

BRG1-associated factor 155|SWI/SNF complex 155 kDa subunit|SWI/SNF complex subunit SMARCC1|SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member 1|chromatin remodeling complex BAF155 subunit|mammalian chromatin remode

Position

3p21.31

Gene Type

protein-coding

Gene Regulation:

Upstream microRNAs
Transcription Factors
Post Transcriptional Modification From dbPTM
Methylation Profile From DiseaseMeth database

Experimentally verified miRNA from miRTarBase   [Top]

Experimentally validated miRNA-TS gene regulation information.

Transcription Factors   [Top]

Regulation From TransFac database

BRG1(h) + hdac2(h) + RbAp48(h) + BAF155(h) + BAF60A(h) + sin3a(h) <==> BRG1(h):hdac2(h):RbAp48(h):BAF155(h):BAF60A(h):sin3a(h) (binding)
Brm(h) + HDAC1(h) + hdac2(h) + RbAp48(h) + BAF155(h) + BAF60A(h) + sin3a(h) <==> Brm(h):HDAC1(h):hdac2(h):RbAp48(h):BAF155(h):BAF60A(h):sin3a(h) (binding)
BAF47(h) + BAF155(h) + BRG1(h) + p53(h) <==> BAF47(h):BAF155(h):BRG1(h):p53(h) (binding)
LAP*-NF-M(c) + BAF155(h) <==> LAP*-NF-M(c):BAF155(h) (binding)
ER-alpha(h) + BAF155(h) <==> ER-alpha(h):BAF155(h) (binding)
BAF47(h) + BAF155(h) + BAF170(h) + Brm(h) + BRG1(h) + MCPH1(m.s.) <==> BAF47(h):BAF155(h):BAF170(h):Brm(h):BRG1(h):MCPH1(m.s.) (binding)
BAF155(h) + MCPH1(m.s.) <==> BAF155(h):MCPH1(m.s.) (binding)
BAF155(h) + Brm(h) + MCPH1(m.s.) <==> BAF155(h):Brm(h):MCPH1(m.s.) (binding)
BAF47(h) + Brm(h) + BRG1(h) + BAF155(h) + BAF170(h) <==> BAF47(h):Brm(h):BRG1(h):BAF155(h):BAF170(h) (binding)
BAF47(h) + BAF53a(h) + BAF155(h) + BAF170(h) + RbAp48(h) + RbAp46(h) + hdac2(h) + sin3a(h) + ING2(h) <==> BAF47(h):BAF53a(h):BAF155(h):BAF170(h):RbAp48(h):RbAp46(h):hdac2(h):sin3a(h):ING2(h) (binding)
SMARCC1(h) --> BAF155(h) (expression).
BAF155(h) + BAF57(h) <==> BAF155(h):BAF57(h) (binding)
SMARCC1(h) --> BAF155(h) (expression).

Post Transcriptional Modification   [Top]

Location (AA)

PTM type

Literature

Database

310Phosphoserine.Swiss-Prot 53.0
328Phosphoserine.Swiss-Prot 53.0
330Phosphoserine.Swiss-Prot 53.0
395Phosphoserine15302935Phospho.ELM 6.0
328Phosphoserine15144186;16083285;17081983Phospho.ELM 6.0
330Phosphoserine15144186;16083285;17081983Phospho.ELM 6.0
335Phosphothreonine16083285Phospho.ELM 6.0
310Phosphoserine17081983Phospho.ELM 6.0

Methylation Profile   [Top]

Chromosome

Location

Source

chr3

Promoter: 47797910 - 47799910Agilent_014791

chr3

Promoter: 47797910 - 47799910GSE27584

chr3

Promoter: 47797910 - 47799910Agilent_014791_44K

chr3

Promoter: 47797910 - 47799910Agilent_014791


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