Gene: LINC00578

100505566
-
long intergenic non-protein coding RNA 578
ncRNA
3q26.32
Ensembl:ENSG00000228221
NC_000003.12
SNP Mapped
4   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
7.050e-1 (AD)  7.064e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs1353899chr3:177511191 (GRCh38.p7)T>A / T>Galcohol dependenceSNV(Single Nucleotide Variation)
rs59539624chr3:177509729 (GRCh38.p7)G>C / G>Talcohol dependenceSNV(Single Nucleotide Variation)
rs7615202chr3:177505279 (GRCh38.p7)T>Calcohol dependenceSNV(Single Nucleotide Variation)
rs1392219chr3:177504641 (GRCh38.p7)C>Talcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
IL21R0.642
CLEC17A0.636
CYBB0.606
SCIN0.599
TLR100.593
PLCB20.589
MS4A4E0.588
TRAF3IP30.585
CD330.58
TLR70.58

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
HES6-0.323
HPDL-0.302
NXPH3-0.285
HHATL-0.279
HES5-0.272
HSD17B6-0.267
ZNF98-0.262
SLC25A48-0.259
CA14-0.259
MOXD1-0.259

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal