Gene: LINC00534

100874052
-
long intergenic non-protein coding RNA 534
ncRNA
8q21.3
Ensembl:ENSG00000253394
NC_000008.11
SNP Mapped
1   ANCO-SNPs
AD
0   
NA (AD)  NA (ND)   (Frontal_Cortex)
1.539e-1 (AD)  1.069e-1 (ND)

ANCO-SNPs

SNP ID Position Alleles Trait Variation Type
rs4735301chr8:90276439 (GRCh38.p7)A>Galcohol dependenceSNV(Single Nucleotide Variation)

DNA Methylation

There is no related methylation information for this gene.

Gene Expression in Different Tissues

Temporal and Spatial Expressions (BrainSpan)

Footnote:
SC: sub-cortical regions; SM: sensory-motor regions; FC: frontal cortex; and TP: temporal-parietal cortex
ST1: fetal (13 - 26 postconception weeks), ST2: early infancy to late childhood (4 months to 11 years), and ST3: adolescence to adulthood (13 - 23 years)
The bar shown representes average value of the expressions.

Top Co-expressed Genes in Brain-Frontal Cortex (BA9) (GTEx v7)

Top 10 positively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
GPR1010.907
ENTHD10.906
DRD30.901
SAG0.893
DGKK0.889
CHAT0.882
GPR10.876
AMBN0.872
SLC35D30.866
TMPRSS60.864

Top 10 negatively co-expressed genes

Gene Symbol Pearson Correlation Coefficient
SLC17A7-0.441
NEUROD2-0.381
NANOS3-0.372
GALNT9-0.362
SOHLH1-0.361
SYTL2-0.348
TNNT2-0.343
EMX1-0.335
MEIS3-0.332
NXPH3-0.327

Drugs/Compounds

    There is no DrugBank record for this gene !

    There is no CTD record for this GENE !

GO/Pathway

GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
GO ID GO Term Qualifier Evidence PubMed
KEGG ID KEGG Term
Reactome ID Reactome Term Evidence

Interactions (STRING v10.5, Interaction Score >= 0.400)

There is no Interaction data for this gene.

Publications (Co-occurrence of gene symbol strings and ANCO-Dependence terms)

PMID Title (Year) Author Journal